Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6255g00005 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTATGCTCCCACTCCATTTTCTCACAGCTGCTGCAGTGAACCAACAAGGGGAGGCTCTTCTATCATGGAGGAGAACCCTGAACGGGTCCCTGGAGGTATTGAGTAACTGGGACCCAGTTCAAGTCACCCCATGTAGCTGGTATGGAGTGAGTTGCAACACGAAGAACGAAGTAGTACAGCTGGATCTGAGGTATGTGGATTTGCTTGGAAGACTGCCCAGTGATTTCACCTCATTGCTTTCCTTAAGCAGTCTGATCTTAGCCGGAACCAATCTCACGGGTTCAATTCCAAAAGAAATAGGTTACCTTGTGGAACTCAGCTACTTGGACTTAAGTGACAATGCCTTGAGTGGCGAAATACCAAGTGAGCTATGTTACTTGCCTAAACTTGAGGAACTCCATCTCAACTCCAATGATCTCGTGGGGTCCATTCCAGTTGCAATTGGAAACCTCACAAAGTTGCAGAAGCTGATCCTATATGACAACCAACTCAGCGGGGAAATTCCTACCACAATCGGCAACCTTAAGAGCCTTCAAGTGATAAGAGCAGGAGGAAACAAGAACCTGGAGGGTCCTCTACCACAAGAAATTGGCAACTGTTCCAGTTTAGCGATGTTGGGTCTTGCTGAAACAAGCCTCTCAGGTTTTCTGCCACCAACTCTTGGCCTTCTGAAGAACCTTGAAACCATTGCCATTTACACTTCCTTACTCTCCGGTGAAATACCACCTGAACTTGGGGACTGCACAGGGCTCCAAAACATTTACCTTTACGAGAACTCTCTCACTGGATCAATACCAAGCAAGTTGGGAAACCTTAAAAACCTCGAAAACCTTCTACTGTGGCAGAACAATCTAGTTGGTACCTTGCCCCCCGAGATTGGCAACTGTGAGCGGTTGTCAGTGATTGACGTGTCAATGAACTCACTAACCGGAAGCATTCCCAACACTTTCGGGAACTTGACATCATTGCAAGAGCTCCAACTCAGTGTAAACCAGATTTCGGGGGAGATTCCAGGAGAACTGGGGAAGTGTCAGCAACTCACACATGTGGAGCTTGACAACAATCTCATCACTGGTACCATACCTTCCGAATTAGGAAACCTTGCTAATTTAACGCTCTTGTTCTTATGGCACAACAAGCTGCAAGGTAACATTCCCTCTTCCCTTTCCAATTGTCAAAACCTAGAGGCTATTGATCTGTCACAGAATGGATTAACGGGTCCCATACCCAAGGGGATATTCCAGCTCAAGAATCTCAACAAGCTTTTGCTCCTATCCAATAACCTCTCAGGGAAAATTCCATCTGAAATTGGGAATTGTTCTTCCCTAATTCGATTCCGAGCCAACGACAACAACATCACCGGGAACATTCCCTCGCAGATTGGGAATCTCAACAATTTGAATTTCCTTGACCTAGGGAATAATCGGATTTCCGGCGGTATCCCGGAGGAGATATCTGGCTGCCGGAATCTCGCATTTCTTGATATACATTCGAACTTTCTCGCCGGAAACCTACCAGAAAGTTTGAGCCGGCTTAATTCGCTTCAGTTTCTCGATGTTTCCGACAACATGATCGAAGGTATACTAAACCCCACCGTCGGCGAACTCACCGCGCTCTCCAAACTAGTTCTCTCGAAGAATCGAATCTCCGGCTCAATTCCGAGTCAAATTGGGTCTTGTTCTAAATTACAATTACTGGATCTCAGTAGCAACAATCTCTCCGGCGAAATCCCCGGCAGCATCGGCAACATTCCGGCATTGGAAATCGCTCTGAATTTGAGCCTGAACCAACTATCCGGCGAGATCCCTCGGGAGTTCTCCGGATTGACGAAGCTCGGAGTGCTGGACATATCTCACAACACTCTCAGCGGAAACATTCAATATCTCGCGGGTCTGCAGAATCTGGTGGTGCTCAATATCTCGAATAACAAATTCTCGGGACGAGTTCCGGATACGCCTTTCTTCGCGAAGCTGCCGTTGAGTGTGCTGGCGGGGAACCCGGCGCTGTGCTTTTCCGGAAACGAGTGCAGTGGCGACGGCGGCGGAAGGTCGGGACGGCGGGCTAAGGTAGCGCGCGTGGCGATGGTGGTCCTGCTGTGCACCGCGTGCTTGCTGCTCATGGCGGCGCTATATGTCGTCGTCGCAGCGAAACGGCGAGGGGACCGCGAAAACGACGTGGAGCTAGATGGAAAGGACAGCGACGTGGACATGGCCCCACCTTGGGAAGTGACACTGTACCAGAAACTCGATCTGTCCATCTCTGACGTAGCTAAATGTCTCACTGCTGGCAACGTCATCGGCCAAGGCCGATCCGGCGTCGTTTATAGGGTCGACTTGTCGAGTACGGGACTCGCCGTGGCGGTGAAGAAGTTCCGGTTGTCGGAGAAATTCTCCGCGGCGGCGTTCTCGTCGGAGATTGCCACGCTTGCGCGAATCCGTCACCGGAACATCGTGCGGCTGCTGGGTTGGGGGGCCAACAGGAGAACCAAGTTACTGTTTTACGATTATTTACCGAATGGTAACCTGGACACGCTGTTACATGAGGGGTGCACAGGATTAATTGATTGGGAGACGAGGCTCAAGATAGCGTTGGGGGTGGCTGAGGGCGTGGCTTATTTGCACCACGATTGCGTGCCTGCTATCTTGCACCGGGACGTCAAGGCGCAGAACATTTTGTTAGGAGACAGATACGAGCCCTGTTTGGCGGATTTTGGTTTCGCTCGATTCGTGGAAGAGGATCACGCATCCTTTTCGATTAATCCACATTTCGCCGGCTCCTACGGTTACATTGCTCCCGAGTATGCTTGCATGCTTAAAATCACAGAGAAGAGCGACGTGTACAGCTTTGGAGTGGTCCTACTGGAGATAATAACGGGGAAAAGGCCAGTGGATCCATCATTCCCGGATGGGCAACATGTTATTCAGTGGGTCAGGGAGCACCTCAAGAGCAAGAAGGACCCGATCCAGGTTCTAGATTCCAAGCTCCAAGGCCATCCAGACACACAAATCCAAGAGATGCTACAAGCACTTGGTATTGCCCTCTTGTGCACAAGTAATCGTGCAGAGGATCGACCGACAATGAAAGATGTTGCAGCATTATTGAGAGAAATTCGTCACGATCCTCCACCAGGCGCTGAGCCCCACAAGCCCAAACCCATTACATCTCAAGCTTCATCCTATTCCTCCTCCTCTGTCACCCCTGCTCAGTTGTTGCTCCTACAATCTACCTCCAACTCCTCCTCATCCCTTGCTTATTCCTCTTCCTCAGCAACACCCTACCCCCCTCCAAGGAATCAATCCTCCATTCAAATTTAA 3357 0.4993 MPVNPWTLFFLCISLMLPLHFLTAAAVNQQGEALLSWRRTLNGSLEVLSNWDPVQVTPCSWYGVSCNTKNEVVQLDLRYVDLLGRLPSDFTSLLSLSSLILAGTNLTGSIPKEIGYLVELSYLDLSDNALSGEIPSELCYLPKLEELHLNSNDLVGSIPVAIGNLTKLQKLILYDNQLSGEIPTTIGNLKSLQVIRAGGNKNLEGPLPQEIGNCSSLAMLGLAETSLSGFLPPTLGLLKNLETIAIYTSLLSGEIPPELGDCTGLQNIYLYENSLTGSIPSKLGNLKNLENLLLWQNNLVGTLPPEIGNCERLSVIDVSMNSLTGSIPNTFGNLTSLQELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGTIPSELGNLANLTLLFLWHNKLQGNIPSSLSNCQNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSEIGNCSSLIRFRANDNNITGNIPSQIGNLNNLNFLDLGNNRISGGIPEEISGCRNLAFLDIHSNFLAGNLPESLSRLNSLQFLDVSDNMIEGILNPTVGELTALSKLVLSKNRISGSIPSQIGSCSKLQLLDLSSNNLSGEIPGSIGNIPALEIALNLSLNQLSGEIPREFSGLTKLGVLDISHNTLSGNIQYLAGLQNLVVLNISNNKFSGRVPDTPFFAKLPLSVLAGNPALCFSGNECSGDGGGRSGRRAKVARVAMVVLLCTACLLLMAALYVVVAAKRRGDRENDVELDGKDSDVDMAPPWEVTLYQKLDLSISDVAKCLTAGNVIGQGRSGVVYRVDLSSTGLAVAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIDWETRLKIALGVAEGVAYLHHDCVPAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDHASFSINPHFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQHVIQWVREHLKSKKDPIQVLDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDPPPGAEPHKPKPITSQASSYSSSSVTPAQLLLLQSTSNSSSSLAYSSSSATPYPPPRNQSSIQI 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6255g00005 1118 SUPERFAMILY L domain-like 520 667 - -
Vium6255g00005 1118 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 1049 - -
Vium6255g00005 1118 Gene3D Phosphorylase Kinase; domain 1 756 850 - -
Vium6255g00005 1118 SMART serkin_6 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6255g00005 1118 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
Vium6255g00005 1118 SUPERFAMILY Protein kinase-like (PK-like) 768 1082 IPR011009 -
Vium6255g00005 1118 FunFam LRR receptor-like serine/threonine-protein kinase 524 599 - -
Vium6255g00005 1118 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Vium6255g00005 1118 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vium6255g00005 1118 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Vium6255g00005 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Vium6255g00005 1118 SUPERFAMILY L domain-like 255 541 - -
Vium6255g00005 1118 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
Vium6255g00005 1118 SMART LRR_sd22_2 117 149 - -
Vium6255g00005 1118 SMART LRR_sd22_2 526 544 - -
Vium6255g00005 1118 SMART LRR_sd22_2 623 645 - -
Vium6255g00005 1118 SMART LRR_sd22_2 165 191 - -
Vium6255g00005 1118 SMART LRR_sd22_2 262 288 - -
Vium6255g00005 1118 SMART LRR_sd22_2 574 600 - -
Vium6255g00005 1118 SMART LRR_sd22_2 478 501 - -
Vium6255g00005 1118 SMART LRR_sd22_2 382 411 - -
Vium6255g00005 1118 Gene3D Ribonuclease Inhibitor 362 603 IPR032675 -
Vium6255g00005 1118 SUPERFAMILY L domain-like 27 300 - -
Vium6255g00005 1118 MobiDBLite consensus disorder prediction 1052 1075 - -
Vium6255g00005 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1065 - -
Vium6255g00005 1118 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Vium6255g00005 1118 ProSiteProfiles Protein kinase domain profile. 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6255g00005 1118 Gene3D Ribonuclease Inhibitor 283 361 IPR032675 -
Vium6255g00005 1118 Pfam Protein kinase domain 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6255g00005 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Vium6255g00005 1118 Gene3D Transferase(Phosphotransferase) domain 1 851 1057 - -
Vium6255g00005 1118 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Vium6255g00005 1118 Gene3D Ribonuclease Inhibitor 604 691 IPR032675 -
Vium6255g00005 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Vium6255g00005 1118 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Vium6255g00005 1118 SMART LRR_typ_2 526 549 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 117 141 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 430 454 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 550 574 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 478 502 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 334 358 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 382 406 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 286 310 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 646 679 IPR003591 -
Vium6255g00005 1118 SMART LRR_typ_2 165 189 IPR003591 -
Vium6255g00005 1118 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Vium6255g00005 1118 MobiDBLite consensus disorder prediction 1094 1118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6255g00005 Vium-Chr6255 74693 78998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6255g00005 26 1053 Receptor kinase-like Gene Family AT5G56040 55.834 0.0 1112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium6255g00005 Pkinase 4.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6255g00005 - - gmx:100778064 1884.77