Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6251g00005 ATGGCTATGTTTGATCTCAATGTTGACATCAACCATGCTGATGCAGATTCTGGCTCAAGCTGTGCTCAAAAGGAGGCGAAACTGCAGAGTTTTCCGACTGAAATCTCAGATTCCAGAACCTCCAACTCCTCTGTGTGGAATCCTGCAGATGAAGATTCCTCAAACAATTCCTCTCCCCTGATTTTTGACATACTGAAGAAAGAGAGGGGTGGCTCAGAGTTCAACATGGAGCAAAACATGGCACAGAAGGGAGAGATGGCGACAAGGACCCTTTTCCCCGTGACTTCTTCTGATAAAGGAGGAAGAGTTCCTGATTTCAAATCTGGGTTGTGGGGTAATACTCAATTGTTGAAACCGTCCTTTCCTGAATCTGATGAACAGAATGAACTGAGAACCTTACAGCAGAAGCTACCACATGTGAGGAAAAACAGGAGAGGACCAAGGTCTCGCAGTTCTCAATACCGAGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATTTGGGATTGTGGGAAGCAGGTCTATCTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCGTACGATAGGGCTGCTATTAAGTTTCGTGGAATGGATGCTGATATAAACTTTAGTCTGAGAGATTATGAGGAGGATTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTGCTTGTTCTTCGTCGACAAATCAATGGAATCTCGAGGAGAAACGCAACTTACAAAAGTGCATTAGCTCTTCACAAAGGTGGTCAAGGAGAGCCAAGTATGGGACCATTTCTTAGCAAGACATTTTATCCCGAGTCTTCCATCAAGTATGATGAAGAAAAAGTGGAGAGCAGTTTTAGAGCTTTTTCCTATAAGGAAAAAATAATTGGAAATTCCAGTATAGCAGGCACTTGCCATGATCTTGATTTGAGGCTGGGGATTTCTCCATGTTCTAAAAAGTTGAAGAATTGTGATTATGGTGGAGACTATTCCTTTGGATGTGTGGCTTGTAAGATACCCCAGGAGATAGGAACAATGTGTGAGGAGAAGAGCATGGTGGAGAGAATGAGAAGTGTTCCTCTGCAAAAGTTTTGCAGCAATGGCAGCATTGGCTCAAGGGCTTTGCAATCAAATGCAGCATCATCAGGATTCGTCACATATCAATTGTGCCAACACAACTCATCATTAACTCTCCAAGGTTGTGGTGTCACACTAGTAGATCAAATCAAACCACTATAA 1242 0.4364 MAMFDLNVDINHADADSGSSCAQKEAKLQSFPTEISDSRTSNSSVWNPADEDSSNNSSPLIFDILKKERGGSEFNMEQNMAQKGEMATRTLFPVTSSDKGGRVPDFKSGLWGNTQLLKPSFPESDEQNELRTLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGMDADINFSLRDYEEDLKQMRGLSKEEFVLVLRRQINGISRRNATYKSALALHKGGQGEPSMGPFLSKTFYPESSIKYDEEKVESSFRAFSYKEKIIGNSSIAGTCHDLDLRLGISPCSKKLKNCDYGGDYSFGCVACKIPQEIGTMCEEKSMVERMRSVPLQKFCSNGSIGSRALQSNAASSGFVTYQLCQHNSSLTLQGCGVTLVDQIKPL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6251g00005 413 Gene3D AP2/ERF domain 152 211 IPR036955 GO:0003700|GO:0006355
Vium6251g00005 413 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Vium6251g00005 413 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700|GO:0006355
Vium6251g00005 413 SMART rav1_2 153 215 IPR001471 GO:0003700|GO:0006355
Vium6251g00005 413 MobiDBLite consensus disorder prediction 14 59 - -
Vium6251g00005 413 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Vium6251g00005 413 CDD AP2 152 208 IPR001471 GO:0003700|GO:0006355
Vium6251g00005 413 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 80 271 - -
Vium6251g00005 413 FunFam AP2-like ethylene-responsive transcription factor 152 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6251g00005 Vium-Chr6251 57304 61643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6251g00005 3 268 AP2-EREBP Transcription Factor Family AT2G28550 50.000 3.43e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6251g00005 AP2 8.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6251g00005 K09284 - gmx:100776138 558.525