Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6242g00001 ATGGTGTCAGAAGAGTCTTGCCATTATGAAAGTTATGACCAGGAGGAATCCGTGTTTCCTGTAGCAGGAAGGCGATGGTCTGTGGCCATTTTTTCCACAAGGAAAACCGAGAAAGGCGTGTTTGATGACGTTTTGGGTGTTAAGTTAGATATGGATAGCGAGCCATGGCCTTCTACATCAGACGCTGCAAAAGATCTGATCAGAAAAATGCTTACTTATGACCCTAAGGAACGGATTACAGCTGCTGAGGCCCTTGAACATCCATGGTTGAAAGAAGGTGGTCAAGCATCAGAAAAGCATCCAGACAGTGCTGTTTTAAGTAGGATGGAAAAGTTCAAAGCAATGAACCAGATGAAGAAGCTTGCAATGAAGGTAATAGCAGAAAATCTTTCAGAGGAAGAAACAAAGGGCCCCAGACAAATGTTCAACAATATGGATACTGATGGCAGTGGCACTATCACATTTGAAGAACTCAAATCTGGATTATCCAGATTGGGTTCCCTGCCTAGTGAATCTGAAATAAGGCAGCTATTGAATGCTATTGGTAATGACAAGAATGGAACAATTAACTATTATGAATTCGTTGCTGCCACCATGGATCGACACAGACTGGAGAAGGGGGGGAGTTTGTTCAAGGCTTTTCATTACTTTGACAAGGATGACAAGGGGTTAGTCTTCAGTTCATTAATTTTATAA 696 0.4195 MVSEESCHYESYDQEESVFPVAGRRWSVAIFSTRKTEKGVFDDVLGVKLDMDSEPWPSTSDAAKDLIRKMLTYDPKERITAAEALEHPWLKEGGQASEKHPDSAVLSRMEKFKAMNQMKKLAMKVIAENLSEEETKGPRQMFNNMDTDGSGTITFEELKSGLSRLGSLPSESEIRQLLNAIGNDKNGTINYYEFVAATMDRHRLEKGGSLFKAFHYFDKDDKGLVFSSLIL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6242g00001 231 ProSiteProfiles EF-hand calcium-binding domain profile. 169 204 IPR002048 GO:0005509
Vium6242g00001 231 SUPERFAMILY EF-hand 129 225 IPR011992 -
Vium6242g00001 231 SMART efh_1 137 165 IPR002048 GO:0005509
Vium6242g00001 231 SMART efh_1 173 201 IPR002048 GO:0005509
Vium6242g00001 231 Gene3D - 106 199 - -
Vium6242g00001 231 ProSiteProfiles EF-hand calcium-binding domain profile. 133 168 IPR002048 GO:0005509
Vium6242g00001 231 CDD EFh 139 197 IPR002048 GO:0005509
Vium6242g00001 231 Gene3D - 116 225 - -
Vium6242g00001 231 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 223 - -
Vium6242g00001 231 ProSitePatterns EF-hand calcium-binding domain. 146 158 IPR018247 -
Vium6242g00001 231 Gene3D Transferase(Phosphotransferase) domain 1 35 91 - -
Vium6242g00001 231 Pfam Protein kinase domain 43 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6242g00001 231 SUPERFAMILY Protein kinase-like (PK-like) 41 113 IPR011009 -
Vium6242g00001 231 FunFam Calmodulin-2 A 127 230 - -
Vium6242g00001 231 Pfam EF-hand domain pair 140 198 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6242g00001 Vium-Chr6242 15426 18928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6242g00001 36 223 EF-hand Containing Proteins AT1G50700 60.638 2.45e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium6242g00001 EF-hand_7 2.2e-10 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6242g00001 K13412 - vum:124842744 463.766