Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium623g00001 ATGCCTGTTCTTCTTCTACTCCTGGTGTTCTGCGCACCGCTCTTAACGTGCGCCGACCGCACCGCCGTTACTGTTGTGGAGATCCAAGCCTTGACGTCCTTCAAGCTCAACCTCCACGACCCCGTCGGAGCTCTCGACGGTTGGGATCCGACGTCTCCGGCGGCACCGTGTGACTGGCGCGGAGTCGCATGCATGAACGGCCGAGTCACGGAGTTGCGCCTGCCTCGCCTTCAACTCGGGGGCAGACTCAGTGACCGTCTCTCCGAGTTGCGCATGCTACGCAAGATAAGCCTTCGCTCAAACAACTTAAACGGAACCGTTCCTTCGTCGCTCTCCAAATGCACGCTCTTACGGTCATTGTTCCTGCAGGAGAATTCGTTTACCGGCAACCTTCCGACGGAGATCGCCAACCTCACTGGTCTTCAGATTCTCAACGTCGCGCTGAACCGCCTCTCCGGCAGTATCCCCGGCCTTCTTCCTCTCGGCCTCAAAGCCCTCGACCTCTCGTCGAACGCCTTCTCTGGCGAGATTCCAAGCTCCTTGTCGAACCTCTATCAGCTTCAGTTGATAAACCTCTCGTATAATCAGTTATCCGGCGAGATTCCGGCGAGCCTCGGGGATCTTCAGCAGCTGCAGTACCTCTGGCTGGACCACAATCTCCTCGGAGGAACGCTTCCTTCTGCGCTCGCAAATTGCTCCGCGCTTCTGCATCTGAGCGTGGACGGAAACGCGCTTACCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCGAGACTTCAGGTGATGTCACTGTCTCAGAACAACTTCACCGGCTCCATTCCAGCTTCCGTTTTCTGCAATGGTTCTGTCCACGCGCCGTCGTTGCGGATTGTTCACCTTAGTTTCAACGGTTTCGTGGATTTCGTGGGGCCTGAGATGAGCACGTGTATAAGTGTTCTTCAGGTTTTGGATATTCAGCACAATCGGATACGAGGCACGTTTCCGTTGTGGTTGACCAACGTGACCACGTTGACCGTGCTTGATGTGTCCAATAATGCACTTTTTGGGGAAGTTCCGCCCCAAATAGGAAATCTTTTTAAGTTGGAGGTGTTGAAGATGGCTAATAATTCCTTCACCGGTACCATTCCGGTGGAACTGAAGAAATGTGGGTTCCTAAGCGTCGTTGATTTTGAAGGAAACGAGTTTGGCGGGGAAGTTCCTTCGTTTTTGGGTGATGTTACGGGGCTGAAGGTGCTATCTCTCGGTGGGAACCACTTCTCTGGTTCGGTTCCGGTGAGTTTTGGAAACCTTTCATATCTTGAAATGTTGAGTTTGTGGGGTAACAGGTTGACTGGAAGTATGCCTGAGATGATAATGAGTTTGAACAATTTGACGATACTAGACCTTAGTGGAAACAAATTTACGGGTCAAGTTTATGCGAGTATTGGGAATTTGAATAAGTTGACGGTTCTCAATCTTAGTGGCAATGGCTTCTCTGGAAAAATTCCTTCTAGTTTGGGGAATCTTTTCAAGCTAACTTCGCTTGACTTGAGCAAACAGAATCTTTCTGGAGAATTACCGCTTGAGCTCTCGGGATTGCCCAGTTTGCAAGTTGTTGCACTGCAGGAAAACAAGTTATCTGGTGATGTGCCTGAAGGGTTTAGTAGTTTGACGAGTTTGCAGTATGTTAATCTCAGTTCTAATGCCTTTTCCGGGTCTATTCCTGAAAATTATGGTTTTCTTCGTTCATTGCTTGTTCTTTCGTTGTCTGGTAATGACATTACAGGAGCAATCCCTTCGGAAATTGGAAATTGCTCTGGTATTGAAATTCTGGAGCTTGGATCAAACTCTCTGGTAGGTCGCATTCCTGCTGATCTCTCTCGTCTCACCTTTTTGAGAGTGCTTGATTTGAGTGGAAACACTTTAACTGGGGATTTGCCTGAGGAAATCTCCAAATGCTCGGGGCTAACCACTTTGCTGGTGGATCACAACCATCTTTCCGGGGATATACCGGGGTCCTTGTGGAATCTAGCAAACCTGACAATGCTAGATCTCTCTGCTAACAACTTGAGTGGGAAAATTCCAAGCAATCTTTCTATGATTCCGGGTTTAGTGTTCTTAAATGTCTCGGGAAATAACTTGGACGGTGAGATACCACCAACATTGGGATTTCGGTTCAGTAACCCAGATGTTTTCACAGATAATCCAGGTTTATGTGGGAAGCCATTGGATACGAAATGCGAAGATATAAATAATGGTAAGGACAGAAAGAGGATGATTGTGCTTGTGGTTGTCGTTGCTTGCGGAGCTTTTGTACTGGTTTTGTTTTGCTGCTTCTACGTGTTCAGTCTATTGAGATGGCGTAAAAGACTGAAACGGGGTGTATCGGGTGAAAAGAAGAAGAGTCCCGCTAGAGCCAGTTCTGGAACAAGTGGAGGTCGTAGCAGCACTGATAGTGGGGGACCAAAACTAGTGATGTTTAACACTAAAGTTACACTTGCTGAGACCATTGAAGCAACAAGACAATTCGACGAAGAGAACGTGCTGAGCAGAACAAGGTATGGATTAGTGTTCAAAGCCTGTTACAACGATGGAATGGTCCTCTCCGTTCGCAGGCTCCAAGATGGATCATTGGATGAAAACATGTTTAGAAAAGAAGCCGAATCACTAGGCAAAGTGAAGCACCGAAATTTAACAGTTCTCAGAGGTTATTATGCTGGGCCACCTGACATGAGACTCCTAGTCTACGATTACATGCCCAATGGAAACCTCGCAACCCTCCTCCAAGAAGCTTCTCACCAAGATGGCCACGTTCTAAATTGGCCAATGCGACACCTCATTGCACTGGGCATTGCCCGTGGTTTAGGCTTCCTACACCAATCCTCAATGGTCCACGGCAACGTGAAACCACAAAATGTCCTATTCGATGCAGATTTCGAAGCCCATTTATCAGATTTTGGGTTAGAAAAGTTAACAGTAGCCACCACCCCAGGCGAAGCCTCAACTTCAGCATCGGTTGGCACGTTGGGTTACGTTTCTCCAGAAGCAGTCTTAACCGGGGAAGCCACGAAGGAGAGTGATGTTTACAGCTTTGGCATTGTGTTGTTGGAACTGCTGACTGGAAAACGACCCGTCATGTTCACCCAGGACGAAGACATAGTAAAGTGGGTAAAAAAACAATTACAAAGGGGTCAAATAACAGAGCTATTAGAACCGGGTTTGCTTGAGTTGGATCCAGAATCATCAGAGTGGGAAGAGTTTTTACTGGGTGTAAAAGTTGGGTTACTTTGCACAGCACCTGACCCTCTTGATCGACCAACCATGTCTGACATTGTTTTCATGCTTGAAGGCTGTCGAGTCGGTCCTGATATCCCATCCTCCGCGGATCCCACCTCCCAACCTTCTCCGGCCTAA 3393 0.4833 MPVLLLLLVFCAPLLTCADRTAVTVVEIQALTSFKLNLHDPVGALDGWDPTSPAAPCDWRGVACMNGRVTELRLPRLQLGGRLSDRLSELRMLRKISLRSNNLNGTVPSSLSKCTLLRSLFLQENSFTGNLPTEIANLTGLQILNVALNRLSGSIPGLLPLGLKALDLSSNAFSGEIPSSLSNLYQLQLINLSYNQLSGEIPASLGDLQQLQYLWLDHNLLGGTLPSALANCSALLHLSVDGNALTGVIPSAISALPRLQVMSLSQNNFTGSIPASVFCNGSVHAPSLRIVHLSFNGFVDFVGPEMSTCISVLQVLDIQHNRIRGTFPLWLTNVTTLTVLDVSNNALFGEVPPQIGNLFKLEVLKMANNSFTGTIPVELKKCGFLSVVDFEGNEFGGEVPSFLGDVTGLKVLSLGGNHFSGSVPVSFGNLSYLEMLSLWGNRLTGSMPEMIMSLNNLTILDLSGNKFTGQVYASIGNLNKLTVLNLSGNGFSGKIPSSLGNLFKLTSLDLSKQNLSGELPLELSGLPSLQVVALQENKLSGDVPEGFSSLTSLQYVNLSSNAFSGSIPENYGFLRSLLVLSLSGNDITGAIPSEIGNCSGIEILELGSNSLVGRIPADLSRLTFLRVLDLSGNTLTGDLPEEISKCSGLTTLLVDHNHLSGDIPGSLWNLANLTMLDLSANNLSGKIPSNLSMIPGLVFLNVSGNNLDGEIPPTLGFRFSNPDVFTDNPGLCGKPLDTKCEDINNGKDRKRMIVLVVVVACGAFVLVLFCCFYVFSLLRWRKRLKRGVSGEKKKSPARASSGTSGGRSSTDSGGPKLVMFNTKVTLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSVRRLQDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLGFLHQSSMVHGNVKPQNVLFDADFEAHLSDFGLEKLTVATTPGEASTSASVGTLGYVSPEAVLTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium623g00001 1130 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Vium623g00001 1130 SMART LRR_sd22_2 670 693 - -
Vium623g00001 1130 SMART LRR_sd22_2 622 651 - -
Vium623g00001 1130 SMART LRR_sd22_2 454 480 - -
Vium623g00001 1130 SMART LRR_sd22_2 208 234 - -
Vium623g00001 1130 SMART LRR_sd22_2 334 360 - -
Vium623g00001 1130 ProSiteProfiles Protein kinase domain profile. 836 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium623g00001 1130 MobiDBLite consensus disorder prediction 791 816 - -
Vium623g00001 1130 Gene3D Phosphorylase Kinase; domain 1 808 911 - -
Vium623g00001 1130 SMART LRR_typ_2 90 114 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 334 358 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 256 280 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 184 207 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 526 549 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 622 646 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 478 502 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 670 701 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 550 572 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 454 477 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 138 161 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 574 598 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 406 429 IPR003591 -
Vium623g00001 1130 SMART LRR_typ_2 208 232 IPR003591 -
Vium623g00001 1130 SUPERFAMILY Protein kinase-like (PK-like) 816 1118 IPR011009 -
Vium623g00001 1130 MobiDBLite consensus disorder prediction 796 816 - -
Vium623g00001 1130 FunFam Nuclear pore complex protein NUP107 24 159 - -
Vium623g00001 1130 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 912 1116 - -
Vium623g00001 1130 SUPERFAMILY L domain-like 475 736 - -
Vium623g00001 1130 Gene3D Ribonuclease Inhibitor 162 281 IPR032675 -
Vium623g00001 1130 Pfam Protein kinase domain 846 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium623g00001 1130 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Vium623g00001 1130 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Vium623g00001 1130 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Vium623g00001 1130 Pfam Leucine rich repeat 163 221 IPR001611 GO:0005515
Vium623g00001 1130 FunFam Inactive leucine-rich repeat receptor-like protein kinase 160 251 - -
Vium623g00001 1130 Gene3D Transferase(Phosphotransferase) domain 1 912 1116 - -
Vium623g00001 1130 SUPERFAMILY L domain-like 52 345 - -
Vium623g00001 1130 Gene3D Ribonuclease Inhibitor 282 472 IPR032675 -
Vium623g00001 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 475 1111 - -
Vium623g00001 1130 Gene3D Ribonuclease Inhibitor 26 161 IPR032675 -
Vium623g00001 1130 Pfam Leucine Rich Repeat 625 646 IPR001611 GO:0005515
Vium623g00001 1130 Pfam Leucine Rich Repeat 480 502 IPR001611 GO:0005515
Vium623g00001 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 622 740 - -
Vium623g00001 1130 FunFam Uncharacterized protein 256 472 - -
Vium623g00001 1130 Gene3D Ribonuclease Inhibitor 473 748 IPR032675 -
Vium623g00001 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 799 911 - -
Vium623g00001 1130 SUPERFAMILY RNI-like 248 564 - -
Vium623g00001 1130 FunFam Leucine-rich receptor-like protein kinase family protein 473 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium623g00001 Vium-Chr623 2222 7221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium623g00001 3 1130 Receptor kinase-like Gene Family AT4G36180 68.629 0.0 1489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vium623g00001 Pkinase 5.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium623g00001 - - gmx:100795838 1898.25