Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6235g00007 ATGTATGCTTCAATCCCTCTTCTCCTCCTTTTCACCTTCTTAATTTCATCCATTCTCTCCTTCATCTTTCTGCGTCGAAATCACACCCAAGATCACCGGAGACACCCGCCGGGCCCACCACCATTCCCGATCATCGGTAACCTCCACTTGCTGGGGAAGCTCCCGCACCGCACGCTCCAGGCCCTGGCCCAACAATACGGGCCCATCATGTCCCTTCGCCTGGGTCAGGTCCCAACCGTGGTCGTCTCCTCCTCCGAGTCCGTCCAACACTTCCTCAAATCACACGACGTCGTTTTCGCTAGCCGTCCAATACTCGAAGCGTCCAAGTACTTCGGCTACGGCTCCAAGGGACTAGTGTTCTCGGAGTACGGCCCGTACTGGCGGCACATGAGGAAAGTGTGCACGCTCCAACTTCTGAGCGCGTCGAAGGTGGAGTCTTTCGCGCCGTTGAGGAAGCGGGAGCTGGAGCTGGCAGTGAAGTCGGTGCAGGAGCGCGCCGCAAGAGGGGAGGTGTTGGACCTTAGCATGGTGGTGCACGACGTTGTGGAGGATATCGTGTACAAAATGGTGCTGGGATGTAGCAAGCACGATGAGTTTGATTTGAAGGGGTTGATCCAGAACGGGATGAACCTTACCGGTGCGTTTAATTTAGCGGATTATGTGCCTTGGCTTGGTTCTTTGGATCTTCAGGGATTGAATCGAAGTTACAAGAAAATTAGTACAGCACTTGACCAAGTGTTGGAAAAGATAATAAAGGAGCATGAAGACGGTTCAAATGCACAAAATGAGCAGCAACATAAGGACTTCGTAGACATATTACTCTCGCTGATGTACCAACCCATGGATCCTTATGATGAACAAAGCCATGTCATTGATCGAACTAACATCAAGGCTATACTTTTAGATATGATTTCTGGGGCATTTGAAACTTCTGCAACTGTGGTGGAGTGGACGCTATCCGAACTCCTAAGGCATCCAAGAGTGATGAAAAAGCTTCAAGATGAGCTAGATAATGTGGTTGGAAGGAACAAATTAGTGGAGGAAAATGATTTGGTAAAGTTAAATTACTTGGATATTGTGATCAAGGAGACATTGAGACTATATCCTCCTGGACCATTAGTTCCCCGAGAGTCAACAGAGGATGCTATAGTTCAGGGTTATTTCATAAAGAAAAAATCAAGAATCATAATAAACTTATGGGCCATGGGAAGAAATTCTACGATATGGTCTGATAATGCTGAAGTATTTTATCCAGAGAGATTCATCGATAACAATTTAGACTTCAGAGGATATGACTTTAAGTATATACCATTTGGTTTTGGTCGAAGGGGCTGCCCAGGAATAAACCTGGGCTTAGCAACAGTTAAACTTGTTGTGGCTCAATAA 1386 0.4697 MYASIPLLLLFTFLISSILSFIFLRRNHTQDHRRHPPGPPPFPIIGNLHLLGKLPHRTLQALAQQYGPIMSLRLGQVPTVVVSSSESVQHFLKSHDVVFASRPILEASKYFGYGSKGLVFSEYGPYWRHMRKVCTLQLLSASKVESFAPLRKRELELAVKSVQERAARGEVLDLSMVVHDVVEDIVYKMVLGCSKHDEFDLKGLIQNGMNLTGAFNLADYVPWLGSLDLQGLNRSYKKISTALDQVLEKIIKEHEDGSNAQNEQQHKDFVDILLSLMYQPMDPYDEQSHVIDRTNIKAILLDMISGAFETSATVVEWTLSELLRHPRVMKKLQDELDNVVGRNKLVEENDLVKLNYLDIVIKETLRLYPPGPLVPRESTEDAIVQGYFIKKKSRIIINLWAMGRNSTIWSDNAEVFYPERFIDNNLDFRGYDFKYIPFGFGRRGCPGINLGLATVKLVVAQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6235g00007 461 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS E-class P450 group I signature 445 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 FunFam Cytochrome P450 83B1 22 461 - -
Vium6235g00007 461 Pfam Cytochrome P450 36 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 CDD CYP71-like 65 461 - -
Vium6235g00007 461 Gene3D Cytochrome P450 21 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 SUPERFAMILY Cytochrome P450 30 460 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6235g00007 461 Coils Coil 329 349 - -
Vium6235g00007 461 PANTHER CYTOCHROME P450 93A3-LIKE 13 461 - -
Vium6235g00007 461 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6235g00007 Vium-Chr6235 22990 25291 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6235g00007 36 461 Cytochrome P450 AT3G48310 40.187 8.42e-116 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6235g00007 - - gmx:100814172 694.115