Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6232g00001 ATGATGTTGGGGGAGACGAACCGCGCAAACCCAACCGTACACGTCCCACCGTGGCCGCTCATCCACCAATCCTCGCCGGAGATCTTTTCACCGTACACCGCCAATGCTGATTACTCTCCGTACTCTCTGCAAGAAGCTCTCAGCGCCCTTCAGCACTACGACTCCACTGATGCAGAGTCAGACTCTGATGTTCCTTCCCTGGAATCGGACGTTCCGGTTGACGCCTACTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGCGAGAAGGCTCGCCGCCGTGATCCCCGCAAGTATCACTACTCCGGTTCGGCCTGCCCCGATTTTCGCAAGGGAAGTTGCAAGAAAGGTGACGCATGCGAGTACGCGCACGGGGTTTTCGAGTGCTGGCTCCATCCCGCTCGTTACCGCACTCAACCGTGCAAGGACGGCACCAGTTGCCGCCGGCGCGTGTGTTTCTTTGCCCATACGCCGGAGCAACTAAGGGTGTTGCCGCAGCAGAGTCCACGCAGTGCTGACTCGTACGACGGGTCTCCTCTAAGACACGCGATCGAGTCCTCCAAGACGGCGGCGCCCTTCGTGTCTTCTCCCGGGTCGTTGTCGCCGCCGGTGGAGTCTCCGCCTATGTCTCCGATGACTCGTTCCGGGTCTTTGTCTGTTAACGAGATGGTAGCTTCGCTGAGAAACTTGCAACTGGGGAAGATTAAGTCCTTGCCTTCTTCCTGGAATGTTATAGGGTCTCCCGGGTTCGGGTCACCCAGAGGACCAGTGATCCGACCCGGGTTCATCAGTCTTCCTTCGACCCCAACCCAGGCTCCGGTTCGCGGTGGGGTGAATTACTTTGACCTGTGGGAGCGGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCCGGAAGAAACATAAGAGCGAGGATGTTCGAGAAGTTGAGCAAAGAGAACGTTCTTGACGGGCCGGGTTCGGGTGAGCCCGTGGTCCCGGATGTCGGGTGGGTCTCGGAGCTTGTGAGTCGCTGA 1080 0.5898 MMLGETNRANPTVHVPPWPLIHQSSPEIFSPYTANADYSPYSLQEALSALQHYDSTDAESDSDVPSLESDVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSKTAAPFVSSPGSLSPPVESPPMSPMTRSGSLSVNEMVASLRNLQLGKIKSLPSSWNVIGSPGFGSPRGPVIRPGFISLPSTPTQAPVRGGVNYFDLWERSCEEEPVMERVESGRNIRARMFEKLSKENVLDGPGSGEPVVPDVGWVSELVSR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6232g00001 359 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Vium6232g00001 359 PANTHER UNKEMPT FAMILY MEMBER 43 357 IPR045234 -
Vium6232g00001 359 MobiDBLite consensus disorder prediction 207 236 - -
Vium6232g00001 359 Gene3D - 121 184 - -
Vium6232g00001 359 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Vium6232g00001 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 145 IPR000571 GO:0046872
Vium6232g00001 359 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Vium6232g00001 359 SMART c3hfinal6 155 178 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6232g00001 Vium-Chr6232 13166 14921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6232g00001 70 184 C2H2 Transcription Factor Family AT5G12850 71.304 4.22e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium6232g00001 zf-CCCH 8e-06 CL0537