Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6229g00002 ATGGAATTCAGCTGCCCAGAAGATTCCAAAACCTCCAGCGACGAAATCGATCGCTCAGCGGAGCAGAATGATGACATGGGCACCGGCAGATCCTACGAGTGTGTCTTTTGTAAGAGAGGCTTCACCACTGCACAGGCTTTGGGTGGACACATGAACATACACAGAAAAGATAGGGCCAACAGGGCCAAACCTTCCACTTCAACCAAGCTAGATGACACCAATACCTATGCAGATCTCGGGTTATACTCGGCCTCAAATCCCAGCTATCTTTCAAGAGGGACTTACTATTCCACTCTTCCTGATTCAGAGGTAGACCTCAATTACAACTACTACCATCACTTATATTTTCCCTCACACGCTTCTGCTGCCAAATCACCTTCACATGTACAATACAGTGAGGTTTTCTGTGTTGAGAACCAAAGGGATCCTCACCTTCTGTTTGGACAAGATTGGAGACAAAAGGGTTTGACTTTCTACACCAATCCCTTATGTGTACATGGAAATAAAGACAAGATAGAAAACAACACTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCTTAA 576 0.4497 MEFSCPEDSKTSSDEIDRSAEQNDDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANRAKPSTSTKLDDTNTYADLGLYSASNPSYLSRGTYYSTLPDSEVDLNYNYYHHLYFPSHASAAKSPSHVQYSEVFCVENQRDPHLLFGQDWRQKGLTFYTNPLCVHGNKDKIENNTEEDDLDLELRLGHHP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6229g00002 191 PANTHER OS07G0101800 PROTEIN 11 190 - -
Vium6229g00002 191 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Vium6229g00002 191 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vium6229g00002 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vium6229g00002 191 MobiDBLite consensus disorder prediction 7 24 - -
Vium6229g00002 191 Pfam C2H2-type zinc finger 32 56 - -
Vium6229g00002 191 MobiDBLite consensus disorder prediction 1 25 - -
Vium6229g00002 191 Gene3D Classic Zinc Finger 9 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6229g00002 Vium-Chr6229 17292 18623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6229g00002 32 121 C2H2 Transcription Factor Family AT5G43540 41.667 2.63e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6229g00002 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6229g00002 - - ccaj:109812060 280.796