Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6221g00002 ATGACCAAACAGGCCATGGAAATTTGCAAGGAAGTACTAGGTTACGCTGTGGATGATATAAACGAATCCGCTGCGACTTTGGAAAAGTTTGAGCTGAGCAAGATGAACGATTACGCCTATGACCTCAAGGTTTGGATCTCGGGTACCCTTGCCCACCAGCAAACATGCCTGGACGGGTTCGAGAACACGACCACCGAAGCTGGGAAGACAATGGCTAAGGTTCTGAACACGTCGTTGGAAATGAGCAGAAACGCGTTGGACATAGTGAACGGTGTGTCGTCTCTCTTCAAGGGTCTCAACTTGACCTCCTTCGGCTCCAGCAGCCACAGGAAGCTTCTCGCGGAAGAGACTTTGGTTGATGGGTTCCCATCGTGGGTGAGTGAAGGGCAGAGAAAAATTCTGGAATCTACTGATATCACCCCAAATGTAGTGGTGGCTCAGGATGGGAGTGGACAGGTGACCACAATCCACGAGGCTCTCAAACTGGTGCCTAAGAAGAACAAGACGCCTTTTGTGATTTACGTCAAGGCCGGTGTCTACAAGGAGTACGTTAACTTGAACAAGCACATGTCCTTTGTCACCATGATCGGCGATGGCCCCACCCTCACCAGAATCACCGGCGATAAAAACTACGTCGATGGCTTCCAAACCTACAACACCGCAACCGTCGGTGTGAACGCTGCAAACTTCATGGCGAAGAACATTGGGTTCGAGAACACGGCAGGAGCGGAGAAGCACCAAGCTGTGGCTCTGAGGGTAACAGCTGACAAGGCAGTGTTCTACAACTGTCACATGGACGGCTACCAAGACACCCTCTACACCCAGTCCCAGCGCCAGTTTTACCGCGACTGCATTGTCACCGGCACCATCGACTTTGTCTTCGGGGACGCCGTCGCCGTTTTCCAGAACTGCAAGTTCATCGCGAGGAAGCCAATGGAGAACCAGCAGTGCATGGTGACCGCCGGCGGAAGGACCAAGATCGACAGCCCCAGCGCCCTGGTGTTCCAGAGCTGCATCTTCACCGGCGAGCCAGACCTGAAGGCCGTGACCCCGAAGATCGCGTACCTCGGGAGGCCCTGGAGGCTTTTCTCGAAGGTGGTGATAATGGACTCCGAAATCGACGACATATTCGCTCCCGAAGGGTACATGCCCTGGATGGGAAGCGCCTTCAAAGATACCTGCACCTACTACGAGTTCAACAACAGGGGTCCCGGTGCGGACACAACCGGAAGAATCACCTGGCCAGGGTTTAAGGTGATTACCCCTGTTGAGGCTGCCGATTACTACCCCGGGAAGTTCTTTGAGCTGGCTAACTCCACTGACCGTGACGCTTGGATCCTTGACTCTGGGGTACCCTATGCCCTTGGCCCTCTTCCAGCATCCACCGCCCAGCCCGCAGTTTAA 1404 0.542 MTKQAMEICKEVLGYAVDDINESAATLEKFELSKMNDYAYDLKVWISGTLAHQQTCLDGFENTTTEAGKTMAKVLNTSLEMSRNALDIVNGVSSLFKGLNLTSFGSSSHRKLLAEETLVDGFPSWVSEGQRKILESTDITPNVVVAQDGSGQVTTIHEALKLVPKKNKTPFVIYVKAGVYKEYVNLNKHMSFVTMIGDGPTLTRITGDKNYVDGFQTYNTATVGVNAANFMAKNIGFENTAGAEKHQAVALRVTADKAVFYNCHMDGYQDTLYTQSQRQFYRDCIVTGTIDFVFGDAVAVFQNCKFIARKPMENQQCMVTAGGRTKIDSPSALVFQSCIFTGEPDLKAVTPKIAYLGRPWRLFSKVVIMDSEIDDIFAPEGYMPWMGSAFKDTCTYYEFNNRGPGADTTGRITWPGFKVITPVEAADYYPGKFFELANSTDRDAWILDSGVPYALGPLPASTAQPAV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6221g00002 467 ProSitePatterns Pectinesterase signature 1. 167 186 IPR018040 -
Vium6221g00002 467 SUPERFAMILY Pectin lyase-like 140 434 IPR011050 -
Vium6221g00002 467 Pfam Plant invertase/pectin methylesterase inhibitor 4 88 IPR006501 GO:0004857
Vium6221g00002 467 CDD PMEI-like_3 1 94 - -
Vium6221g00002 467 Gene3D - 139 457 IPR012334 -
Vium6221g00002 467 FunFam Pectinesterase 4 139 457 - -
Vium6221g00002 467 ProSitePatterns Pectinesterase signature 2. 286 295 IPR033131 -
Vium6221g00002 467 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 92 IPR035513 -
Vium6221g00002 467 PANTHER PECTINESTERASE 3 446 - -
Vium6221g00002 467 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 91 IPR035513 -
Vium6221g00002 467 Pfam Pectinesterase 142 433 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6221g00002 Vium-Chr6221 3275 5046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6221g00002 2 467 Carbohydrate Esterase AT3G05610 47.269 1.83e-159 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6221g00002 K01051 - gmx:100820068 802.357