Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6221g00001 ATGGCGACTGGATTCGACAGTGCTCATGAGAGGAAGAAGAAGCTCGCAGTTTTGAGCGTCTCTTCTGTCCTCCTGATCGCGATGGTTGCCGCGGTGGCCGTTGGCATAAATGACGACGTCCATGGCGACCACACGGAAGAAGGCGACGGCAGCATCGCGAAATCTCAGAGGAGCGCCAACATGATATGTCAGTCGGCCGAATACAAAGAAACCTGCCAGAAGAGTCTCGCCAATGCTTCCCACGATAACACCGACCTGAAGCAACTTATCATCACCGCCTTCAACGCCACCTCTCGGGAGATTCACAGCAAAATTGAAAACTCAACGCTGTACCACGAGTTGGCCACCGACAACATGACCAAACAGGCCATGGAAATTTGCAAGGAAGTACTAGGTTACGCTGTGGATGATATAAACGAATCCGCTGCGACTTTGGAAAAGTTTGAGCTGAGCAAGATGAACGATTACGCCTATGACCTCAAGGTTTGGATCTCGGGTACCCTTGCCCACCAGCAAACATGCCTGGACGGGTTCGAGAACACGACCACCGAAGCTGGGAAGACAATGGCTAAGGTTCTGAACACGTCGTTGGAAATGAGCAGAAACGCGTTGGACATAGTGAACGGTGTGTCGTCTCTCTTCAAGGGTCTCAACTTGACCTCCTTCGGCTCCAGCAGCCACAGGAAGCTTCTCGCGGAAGAGACTTTGGTTGATGGGTTCCCATCGTGGGTGAGTGAAGGGCAGAGAAAAATTCTGGAATCTACTGATATCACCCCAAATGTAGTGGTGGCTCAGGATGGGAGTGGACAGGTGACCACAATCCACGAGGCTCTCAAACTGGTGCCTAAGAAGAACAAGACGCCTTTTGTGATTTACGTCAAGGCCGGTGTCTACAAGGAGTACGTTAACTTGAACAAGCACATGTCCTTTGTCACCATGATCGGCGATGGCCCCACCCTCACCAGAATCACCGGCGATAAAAACTACGTCGATGGCTTCCAAACCTACAACACCGCAACCGTCGGTGTGAACGCTGCAAACTTCATGGCGAAGAACATTGGGTTCGAGAACACGGCAGGAGCGGAGAAGCACCAAGCTGTGGCTCTGAGGGTAACAGCTGACAAGGCAGTGTTCTACAACTGTCACATGGACGGCTACCAAGACACCCTCTACACCCAGTCCCAGCGCCAGTTTTACCGCGACTGCATTGTCACCGGCACCATCGACTTTGTCTTCGGGGACGCCGTCGCCGTTTTCCAGAACTGCAAGTTCATCGCGAGGAAGCCAATGGAGAACCAGCAGTGCATGGTGACCGCCGGCGGAAGGACCAAGATCGACAGCCCCAGCGCCCTGGTGTTCCAGAGCTGCATCTTCACCGGCGAGCCAGACCTGAAGGCCGTGACCCCGAAGATCGCGTACCTCGGGAGGCCCTGGAGGCTTTTCTCGAAGGTGGTGATAATGGACTCCGAAATCGACGACATATTCGCTCCCGAAGGGTACATGCCCTGGATGGGAAGCGCCTTCAAAGATACCTGCACCTACTACGAGTTCAACAACAGGGGTCCCGGTGCGGACACAACCGGAAGAATCACCTGGCCAGGGTTTAAGGTGATTACCCCTGTTGAGGCTGCCGATTACTACCCCGGGAAGTTCTTTGAGCTGGCTAACTCCACTGACCGTGACGCTTGGATCCTTGACTCTGGGGTACCCTATGCCCTTGGCCCTCTTCCAGCATCCACCGCCCAGCCCGCAGTTTAA 1758 0.541 MATGFDSAHERKKKLAVLSVSSVLLIAMVAAVAVGINDDVHGDHTEEGDGSIAKSQRSANMICQSAEYKETCQKSLANASHDNTDLKQLIITAFNATSREIHSKIENSTLYHELATDNMTKQAMEICKEVLGYAVDDINESAATLEKFELSKMNDYAYDLKVWISGTLAHQQTCLDGFENTTTEAGKTMAKVLNTSLEMSRNALDIVNGVSSLFKGLNLTSFGSSSHRKLLAEETLVDGFPSWVSEGQRKILESTDITPNVVVAQDGSGQVTTIHEALKLVPKKNKTPFVIYVKAGVYKEYVNLNKHMSFVTMIGDGPTLTRITGDKNYVDGFQTYNTATVGVNAANFMAKNIGFENTAGAEKHQAVALRVTADKAVFYNCHMDGYQDTLYTQSQRQFYRDCIVTGTIDFVFGDAVAVFQNCKFIARKPMENQQCMVTAGGRTKIDSPSALVFQSCIFTGEPDLKAVTPKIAYLGRPWRLFSKVVIMDSEIDDIFAPEGYMPWMGSAFKDTCTYYEFNNRGPGADTTGRITWPGFKVITPVEAADYYPGKFFELANSTDRDAWILDSGVPYALGPLPASTAQPAV 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6221g00001 585 SUPERFAMILY Pectin lyase-like 258 552 IPR011050 -
Vium6221g00001 585 NCBIfam pectinesterase inhibitor domain 53 209 IPR006501 GO:0004857
Vium6221g00001 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 209 IPR035513 -
Vium6221g00001 585 FunFam Pectinesterase 55 211 - -
Vium6221g00001 585 PANTHER PECTINESTERASE 24 564 - -
Vium6221g00001 585 CDD PMEI-like_3 62 212 - -
Vium6221g00001 585 Pfam Plant invertase/pectin methylesterase inhibitor 61 206 IPR006501 GO:0004857
Vium6221g00001 585 SMART PMEI_2 54 206 IPR006501 GO:0004857
Vium6221g00001 585 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Vium6221g00001 585 Pfam Pectinesterase 260 551 IPR000070 GO:0030599|GO:0042545
Vium6221g00001 585 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Vium6221g00001 585 Gene3D - 257 575 IPR012334 -
Vium6221g00001 585 FunFam Pectinesterase 4 257 575 - -
Vium6221g00001 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 210 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6221g00001 Vium-Chr6221 56 2184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6221g00001 1 585 Carbohydrate Esterase AT3G05610 44.538 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6221g00001 K01051 - gmx:100820068 925.235