Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium621g00001 ATGGGTAGGTCACCATGCTGTGAAAAAGTGGGCTTGAAGAAAGGCCCTTGGACTCCTGAGGAGGACAAAAAGCTCATGGCTTACATAGAAGAGTTCGGCCACGGAAGCTGGCGTGCCTTGCCTTCAAAAGCTGGCCTTCAAAGATGTGGGAAGAGCTGCAGACTGAGGTGGACTAACTACCTTCGACCCGACATTAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGGAACAGATGGTCAGCTATAGCGGCTCAACTTCCGAAGAGAACCGACAATGAGATAAAGAACTACTGGAACACACACCTGAAGAAAAGGTTAACAAGAATGGGGATAGACCCCACCACCCACAAGCCCAAAACCGATGCGCTTGGTGGCTCCGGTGGTTGCCAATCCAAGGACGCAGCGAACCTCAGCCACATGGCGCAGTGGGAGAGTGCTCGTCTCGAAGCGGAAGCAAGACTGGTGAGAGAGTCAAGGTTGCAAGTCCAGAGCAACCTGGGACCCGGCTCCAACACACAACCCGCGAGGCTGGTCCTCAACAAAATTACTACGCAACAACCCTCTCTACCACCCTGCCTCGACATCCTCAAAGCATGGCAAAGCTCATGGTCGAAGCCACAACCACCAACAAAAGAAAGTAACCCCAAAATGATGCATAGCATGTACGCCATGATGCTATCCACCGAAGACACTCTAGAGTCACCAACCTCCACGTTGTGCTTTCCAGGAACGACACCAACCATGCTTCCTGTATCCAACAATAACAACATTGGAGTACTGTTCAACGAAAACAACGACATGTTTCCTCTCCCAAGCACAAACATGGATGGTGGGTTGATGAAAGAGAACACGGTGTTACATTTGCAAGACGATGATATTATGGCGGCTGTGGAAGCATTTAGAGCCACTACTACAATGTACGACAGCAACAATAATGTTGTTCCTCCCACACTCCACAACGGTGTTGTCCTCGAAGGACTCAACAATGATGAAGGGTTGGTTTATGACTCCAACGATAACTTGGGAGCGGAGGAAGAGAACATGGCAATGATGAACGGGGATGGAAGCCTCTGCAACGTGAACCTGGAAGAGAATAACAAGCATTACTGGAATAACATATTTAATTTGGTGAATGATCCCTTGTCTGGTCCCTCTGTCTTCTGA 1194 0.4899 MGRSPCCEKVGLKKGPWTPEEDKKLMAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGGCQSKDAANLSHMAQWESARLEAEARLVRESRLQVQSNLGPGSNTQPARLVLNKITTQQPSLPPCLDILKAWQSSWSKPQPPTKESNPKMMHSMYAMMLSTEDTLESPTSTLCFPGTTPTMLPVSNNNNIGVLFNENNDMFPLPSTNMDGGLMKENTVLHLQDDDIMAAVEAFRATTTMYDSNNNVVPPTLHNGVVLEGLNNDEGLVYDSNDNLGAEEENMAMMNGDGSLCNVNLEENNKHYWNNIFNLVNDPLSGPSVF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium621g00001 397 CDD SANT 69 112 IPR001005 -
Vium621g00001 397 Gene3D - 13 66 - -
Vium621g00001 397 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium621g00001 397 CDD SANT 16 61 IPR001005 -
Vium621g00001 397 SMART sant 66 114 IPR001005 -
Vium621g00001 397 SMART sant 13 63 IPR001005 -
Vium621g00001 397 FunFam MYB transcription factor 68 129 - -
Vium621g00001 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium621g00001 397 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium621g00001 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium621g00001 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Vium621g00001 397 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium621g00001 397 Gene3D - 69 116 - -
Vium621g00001 397 FunFam MYB-related transcription factor 13 66 - -
Vium621g00001 397 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium621g00001 397 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium621g00001 Vium-Chr621 7671 9664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium621g00001 1 184 MYB Transcription Factor Family AT5G15310 78.261 7.75e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium621g00001 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium621g00001 K09422 - gmx:100809025 663.685