Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6215g00012 ATGTGCAAGACAAAGATGGCGACCAACGCCTCAAGTCCCACTCCCACACCGCGATCACAACAACGCTCCACTCAAAGCCCAAGAACATCCTCCCCAAGGTCCACACTCAGGCCCAATCCTGGGCCCACCACTTCTTTCTCAGACAAACCCTCCACCTCTTACGCCTCCACCGCCAGCGCTCCCTACAGCGGCTCCACCGGCTACCGTCTCTCCTCCGACACCTCCATTGCCAGCCGCACCTCCCTCACCTCTCTCCGCGACACCCTCCCAGAAAACCCTCACATCTACGACTTCTCCGAAATATGCGCCGCCACCAACAACTTCCTCGCCAAGCGACACTCCTCCTCCACCCCCTGCTGGCGCTGCACTCTCCGCGGAGCAGACGTCATTGTCTTCCAGCGCAAGTTCATCCGCAAACTCCAGACGAATGAGCTCCAGCAACTGCTCTCCGTCGTCTGCCGCAGCCACCACGTCAGCATCATCAAACTCCTCGGTGCCTCCGTCTCCGGCGACCACATCTACCTCGTCTACGACTTCGTCAACGGCGCCAGCCTCTCCGATTGTCTCCGCAACAAGAACAACCCGCGCTTCACCGTTCTCTCCACGTGGATGTCGCGAATGCAGGTCGCCACGGATCTCGCTCACGCACTCGATTACATTCACAACAAAACCGGTTTGAACATCAATTTCGTCCACAACCGTATCAAATCCAGCGGCATCATCGTCACGGAACCTTCTTTCAACGCTAGGGTTTGCCATTTCGGCACCGCGCAGCTCTGCGGCGAAATCGACCTCGAAAACGAACAATTAGGCGAAATCAGTGAGATAGGGGAGAAATTTCCGCCGTCCCCAGCGAGATCCAGGCAATTCGAGGGCGTGCGGGGTTACATGGCGCCGGAATTTCAAGCCTCCGGCGTAGCGACTCAGAGGTCTGATATATACGCTTTCGGAGTGGTGTTGTTGGAGCTCCTCTCCGGGGAGGAGCCACTGAAGTTTAAATATGACGAGAAGACGCGCGAGTTTTTGAGGACGTCGGTGATCGAGACGGCGAGAGGCGTGGTTGACGGCGGCGATGGTGGTGTGCAGGGGAAGCTGAGGAAGTGGGTTGATCAGAGATTGAAAGATTCGTTTCCCGTGGACGTAGCGGAGAAGCTGACACGTGTGGCACTGGAGTGCGTACACGTGGATCCAGATAAGCGACCGAACATGGGACAGGTGGCAGGGAAGATCTCGAAGTTTTATTTGAAGTCGAGGATGTGGTCGGACAGTATTAAGGTTCCTGATCTCACTGTTTCACTGGGTCCTCGTTGA 1311 0.566 MCKTKMATNASSPTPTPRSQQRSTQSPRTSSPRSTLRPNPGPTTSFSDKPSTSYASTASAPYSGSTGYRLSSDTSIASRTSLTSLRDTLPENPHIYDFSEICAATNNFLAKRHSSSTPCWRCTLRGADVIVFQRKFIRKLQTNELQQLLSVVCRSHHVSIIKLLGASVSGDHIYLVYDFVNGASLSDCLRNKNNPRFTVLSTWMSRMQVATDLAHALDYIHNKTGLNINFVHNRIKSSGIIVTEPSFNARVCHFGTAQLCGEIDLENEQLGEISEIGEKFPPSPARSRQFEGVRGYMAPEFQASGVATQRSDIYAFGVVLLELLSGEEPLKFKYDEKTREFLRTSVIETARGVVDGGDGGVQGKLRKWVDQRLKDSFPVDVAEKLTRVALECVHVDPDKRPNMGQVAGKISKFYLKSRMWSDSIKVPDLTVSLGPR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6215g00012 436 ProSiteProfiles Protein kinase domain profile. 68 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6215g00012 436 SUPERFAMILY Protein kinase-like (PK-like) 116 407 IPR011009 -
Vium6215g00012 436 MobiDBLite consensus disorder prediction 1 71 - -
Vium6215g00012 436 Pfam Protein kinase domain 139 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6215g00012 436 PANTHER OS09G0572100 PROTEIN 1 436 - -
Vium6215g00012 436 Gene3D Phosphorylase Kinase; domain 1 70 179 - -
Vium6215g00012 436 Gene3D Transferase(Phosphotransferase) domain 1 181 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6215g00012 Vium-Chr6215 142587 144434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6215g00012 91 424 Receptor kinase-like Gene Family AT1G51940 32.249 7.71e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium6215g00012 Pkinase 1.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6215g00012 - - gmx:100792694 691.804