Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6215g00011 ATGGATTCAGTGAATAACATCAGTATAGTAGAGAGGGAATATGAATCTTTTTCAGCTAATGAAGGTTCTTCAATGGTGAGAAACAAAAGACGTTCTTCTAGGGGCATGAAGGGCGACCGCCACATCAAGGTGAATGGGAGAGACCGTCGAGTTCGCCTATCAGCAATATGTGCTGCTCGTATCTTCCAACTCACCCGTGAGCTAGGCAAGAAAACCGACGGTGAAACCATCGAATGGCTCTTGCACAAGGCTGAACCCGCCATTGTGGCCGCCACTGGCACCGGCATTGTGCCTTCCATCATGTCCTCGGTGGACAGTAACGCCACCTTCATGGCCAACACCACCACCACCAACTTGGTGCCACTAGACACAATTACTGCTCAGGATTCCAACTTAGTCACCGTTGCTGCGGTTGCAAGGACAGAACAGCCCATCCCCCCTTTCCATTTCGACTTTGAGTGGATGCAACATTCCGATTTAGGATTTCGTGACAATTAA 498 0.494 MDSVNNISIVEREYESFSANEGSSMVRNKRRSSRGMKGDRHIKVNGRDRRVRLSAICAARIFQLTRELGKKTDGETIEWLLHKAEPAIVAATGTGIVPSIMSSVDSNATFMANTTTTNLVPLDTITAQDSNLVTVAAVARTEQPIPPFHFDFEWMQHSDLGFRDN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6215g00011 165 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 118 IPR005333 GO:0003700
Vium6215g00011 165 Pfam TCP family transcription factor 37 107 IPR017887 -
Vium6215g00011 165 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6215g00011 Vium-Chr6215 134224 134721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6215g00011 34 116 TCP Transcription Factor Family AT2G45680 66.265 9.57e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium6215g00011 TCP 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6215g00011 - K16221 pvu:PHAVU_005G132500g 276.559