Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6215g00008 ATGGCTGAGATTGAGGGCTCTCCTGGAAGCTCCATGCATGGAGTCACAGGAAGAGAGCAAACTTTTGTAGCCTCAGTTGCTTCTCCAATGGTCCCCACCGACACCACAGCAAAGTTTGCTCTCCCTGTAGATTCTGAACACAAGGCCAAGGTTTTCAAACTCTTCTCCCTCGCCAATCCTCACATGAGAACCTTCCACCTTTCTTGGATCTCCTTCTTCACCTGCTTTGTCTCCACCTTCGCAGCAGCCCCTCTTGTTCCCATCATCCGCGACAACCTCAATCTCACCAAAAGCGACGTTGGAAACGCCGGCGTTGCTTCAGTGTCCGGAAGCATTTTCTCTAGGCTCGCAATGGGTGCAGTGTGCGACCTCTTGGGTCCTCGTTATGGCTGCGCCTTCCTCATCATGCTCTCCGCCCCTACCGTGTTTTGCATGGCCTTTGTGCAAGATGCTTCTGGGTATATAGCGGTTCGGTTTTTGATAGGGTTCTCCTTGGCCACGTTCGTGTCGTGCCAGTACTGGATGAGCACCATGTTCAACAGCAAGATCATAGGACTTGCAAATGGAACTGCGGCAGGGTGGGGTAACATGGGTGGTGGAGCCACTCAGCTCATAATGCCTTTGGTGTATGAACTTATCAGAAGAGCTGGGGCTACTCCCTTCACTGCTTGGAGGATTGCCTTCTTTGTTCCTGGTTGGTTGCATGTCATCATGGGGATCTTGGTCCTAACTTTAGGTCAGGACTTGCCTGATGGAAACCTTGGAGCCTTGCAGAAAAAGGGTGATGTAGCCAGAGATAAGTTTTCTAAGGTGCTATGGTATGCCATAACAAATTACAGAACATGGATTTTTGCTCTTCTCTATGGGTACTCAATGGGAGTTGAATTGACAACAGACAATGTCATTGCCGAGTATTTCTATGATAGATTTAATCTGAAGCTGCACACTGCTGGAATCATCGCTGCCTCGTTTGGAATGGCAAACCTAGTTGCTCGACCCTTTGGTGGGTATGCTTCCGATGTTGCAGCGAGGATGTTTGGAATGAGGGGAAGATTGTGGACGCTTTGGATACTCCAAACCTTAGGAGGGGTTTTCTGTATTTGGCTCGGGCGTGCGAATTCTCTTCCTATTGCTGTCTTGGCTATGATATTGTTCTCTATAGGAGCTCAAGCTGCATGTGGTGCAACTTTTGGTATCATTCCTTTCATCTCAAGAAGATCTTTGGGGATCATATCAGGTCTTACTGGTGCGGGTGGAAACTTTGGGTCTGGCCTCACCCAATTGATTTTCTTTTCAACCTCGAAATTCTCCACTTCCGCAGGTCTCTCGTTAATGGGAGCTATGATAGTGGCTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCACAGTGGGGTAGCATGTTCCTACCTCCCTCAAAAGATGTCAACAAATCCACTGAAGAATTCTATTACACCTCTGAATGGAATGAAGAGGAGAGGCAGAAGGGCTTGCACCAGCCAAGTCTCAAGTTCGCTGAGAATAGCCGATCTGAGAGAGGAAAACGCGTCGCATCAGCCCCAACACCTCCAAATACAACTCCCACCCATGTCTAA 1593 0.4871 MAEIEGSPGSSMHGVTGREQTFVASVASPMVPTDTTAKFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDVGNAGVASVSGSIFSRLAMGAVCDLLGPRYGCAFLIMLSAPTVFCMAFVQDASGYIAVRFLIGFSLATFVSCQYWMSTMFNSKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFVPGWLHVIMGILVLTLGQDLPDGNLGALQKKGDVARDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARMFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTSAGLSLMGAMIVACTLPVTLVHFPQWGSMFLPPSKDVNKSTEEFYYTSEWNEEERQKGLHQPSLKFAENSRSERGKRVASAPTPPNTTPTHV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6215g00008 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Vium6215g00008 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Vium6215g00008 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Vium6215g00008 530 MobiDBLite consensus disorder prediction 489 513 - -
Vium6215g00008 530 FunFam Nitrate transporter 2.1 265 466 - -
Vium6215g00008 530 SUPERFAMILY MFS general substrate transporter 59 459 IPR036259 -
Vium6215g00008 530 MobiDBLite consensus disorder prediction 489 530 - -
Vium6215g00008 530 FunFam High affinity nitrate transporter 57 254 - -
Vium6215g00008 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Vium6215g00008 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Vium6215g00008 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 516 IPR044772 GO:0015112
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6215g00008 Vium-Chr6215 86017 88266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6215g00008 1 530 Inorganic Solute Cotransporters AT5G60770 80.566 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6215g00008 K02575 - gmx:547946 1004.59