Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6215g00001 ATGCAGAGATCCGGCTATGGCTCCGATGGAATATTCAGATCTCTCAGACCTTCAATCGTTTTACCCAAACAACCCAACCTCACACTCGTTTCCCACCTCTTCAACAGAGTCGCACCGTTTCCCTCCAAACAAGCTCTTATCGATGCCGATTCTTCTCAAACCCTTTCATTCGTACAGTTGAAAACGCTAACCGTTAAAGTTTCTCACGGCCTCCTCCGCCTCGGTGTCGCCAAAAACGACGTCGTCCTCTTCCTCGCCCCCAACGATATCCGTTACATCGTCTGCTTCCTCGCCGTCACCTCCCTCGGCGCCATCGTAACTACCGTCAACCCCGCATACACCGCTGCCGAGGTCGCCAAACAGGCCAAAGACTCCAATCCCAAACTTGTCATCACCGTCCCCGAACTCTGGGACAAGCTCCAACACCTCAACCTCCCCGCCGTGTTCCTCCACTCCCAGGCGCACTCCCATGCGACTAGCTTCGACGCGCTCGTCCAAGTCGCAGGGTCGCCTACCGAATTTCCGAAAGTTGACGTCAAGCAGAGTGATACGGCGGTGCTGCTGTACTCCTCCGGGACCACCGGTGTGAGCAAGGGCGTGGTTCTAACGCACGGGAACTTCGTGGCGGCATCGTTGATGATTGGGTTGGACGATGATTTGAACGGGGAGATGCATAGCGTGTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGTTTGACGGTGATTTCGTACGCGCAGCTTCAGAGGGGCAACGCTGTGGTGTCTCTGAAGAAGTTTGAATTTGAACTGGTTTTGAAGACGATTGAGAAGTTTAGAGTGACGCATTTGTGGGTTGTGCCTCCGATCATCCTTGCTTTGGCCAAACATGGTTTGGTCGATAAGTATGATCTTTCCTCGCTGAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCTAAGCGTTTCCCTCATGCTACTGTTGCTCAGGGATATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATACAAGGATGGGGATTCGGCATAGTGGCTCTACGGGAATGCTTGTTTCGGGAGTGGAAGCTCAAATAGTTAGCGTGGATACCCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATCACAACAATCCCCAAGCCACAAGATTGACTAAAGATACAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGACGAGGAAGGGCAACTTTTTGTTGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTACGTGGTTCGCTCACCACATAGTTCACTGACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGAGTGACATTCATCAATGCTGTTCCCAAGACAGCTTCGGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.4972 MQRSGYGSDGIFRSLRPSIVLPKQPNLTLVSHLFNRVAPFPSKQALIDADSSQTLSFVQLKTLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYIVCFLAVTSLGAIVTTVNPAYTAAEVAKQAKDSNPKLVITVPELWDKLQHLNLPAVFLHSQAHSHATSFDALVQVAGSPTEFPKVDVKQSDTAVLLYSSGTTGVSKGVVLTHGNFVAASLMIGLDDDLNGEMHSVFLCVLPMFHVFGLTVISYAQLQRGNAVVSLKKFEFELVLKTIEKFRVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPHATVAQGYGMTETCGIVSVENTRMGIRHSGSTGMLVSGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTKDTKGWVHTGDLGYFDEEGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPHSSLTEEDVQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6215g00001 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Vium6215g00001 536 Gene3D - 9 433 IPR042099 -
Vium6215g00001 536 Pfam AMP-binding enzyme 35 438 IPR000873 -
Vium6215g00001 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 531 - -
Vium6215g00001 536 Gene3D - 434 535 IPR045851 -
Vium6215g00001 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Vium6215g00001 536 SUPERFAMILY Acetyl-CoA synthetase-like 24 534 - -
Vium6215g00001 536 FunFam 4-coumarate--CoA ligase 2 434 535 - -
Vium6215g00001 536 CDD 4CL 21 528 - -
Vium6215g00001 536 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6215g00001 Vium-Chr6215 855 4610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6215g00001 1 536 Monolignol Biosynthesis Gene Families AT4G05160 66.360 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6215g00001 K01904 - gmx:100797843 940.258