Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6213g00003 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAAGAGGAAGAGGAGACAGCAGAAGAAATCGTCACAAGAGAAGAAAGCAGCAGGTTGTTACACCAGGATGCAGCAGCTTCCAATTTCGTCATCGGCAATCATCATAATCATCATCATCATCATCATCATCACCACACAACAAAGCAGCTAGATTTCATGGACTTGACACTGGGGAGCAGCAAGGATGAGGGGAATTTGCAAGGATCGGGAGGTGCTGCTTCTTCTGTGTTTGGTCATCATGCAAGTGGTAGTTCTTCTGCCGATGGTAACGTTAACAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACACCGAGTGATGTGGGTAAGCTGAACCGATTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGCTGCTCAATTTTGAGGACAGAAATGGTAAGTCATGGAGGTTCAGGTACTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAACTTGATGCCGGTGACATTGTGTCCTTCCAGCGTGGTGTAGGGGATTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCCGATCACCATCACCACCATGGCCCTGACCCTTCAGCCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCAACACTTCATCAGATGGGGTGCCACTGGAAGATTCTACTCCCTCCCCTCGCCAAACCCACCACGCCACCATGACCATTTGCAACAACACCTCAATTACAACACCATGTATCATCAACATCATCATCCCTTTCATCACCAATTGCAAGGTGCTGCTGGTGCTGGAGGAAATGGAACTCATCACTACAACAACTATCATGACATGAGTAGTTCAGGATCTGGCTCGGTCTATTACCTCAGGTCAACACCCCCACCAATGCCATTCACTGATCACCAAACCTTGAACACAAGACAACAACAACAAGAGGGAGGCAATGTTTCTCATCCTCCTATAATCATTGATTCTGTTCCAGTTGCTCACCACCACCATCATCACCAGCACCACCGTGGTGGCAAGAGTGGTGGTTCTAGTACTAGTACAAGTCCTAGCACTGCAGGCAAAAGACTTAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGACCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGCGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGAACAACCTTCAATGCTTTTTGATCTGGATCCTTCTTTGCAATACCGGCAGTGA 1449 0.4734 MELMQEVKGYSDSREEEEEEETAEEIVTREESSRLLHQDAAASNFVIGNHHNHHHHHHHHHTTKQLDFMDLTLGSSKDEGNLQGSGGAASSVFGHHASGSSSADGNVNNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLYRHRLYIDWRRRPDHHHHHGPDPSATLFTPFFLPNQQHFIRWGATGRFYSLPSPNPPRHHDHLQQHLNYNTMYHQHHHPFHHQLQGAAGAGGNGTHHYNNYHDMSSSGSGSVYYLRSTPPPMPFTDHQTLNTRQQQQEGGNVSHPPIIIDSVPVAHHHHHHQHHRGGKSGGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHATMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEQPSMLFDLDPSLQYRQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6213g00003 482 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 422 IPR044800 GO:0003700
Vium6213g00003 482 SMART B3_2 120 225 IPR003340 GO:0003677
Vium6213g00003 482 MobiDBLite consensus disorder prediction 428 482 - -
Vium6213g00003 482 CDD B3_DNA 118 207 IPR003340 GO:0003677
Vium6213g00003 482 MobiDBLite consensus disorder prediction 79 114 - -
Vium6213g00003 482 Gene3D - 114 232 IPR015300 -
Vium6213g00003 482 MobiDBLite consensus disorder prediction 1 34 - -
Vium6213g00003 482 MobiDBLite consensus disorder prediction 79 118 - -
Vium6213g00003 482 MobiDBLite consensus disorder prediction 337 354 - -
Vium6213g00003 482 ProSiteProfiles B3 DNA-binding domain profile. 120 225 IPR003340 GO:0003677
Vium6213g00003 482 MobiDBLite consensus disorder prediction 337 393 - -
Vium6213g00003 482 Pfam B3 DNA binding domain 120 224 IPR003340 GO:0003677
Vium6213g00003 482 SUPERFAMILY DNA-binding pseudobarrel domain 116 221 IPR015300 -
Vium6213g00003 482 FunFam B3 domain-containing protein 113 233 - -
Vium6213g00003 482 MobiDBLite consensus disorder prediction 428 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6213g00003 Vium-Chr6213 25718 28201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6213g00003 111 409 RAV Transcription Factor Family AT2G46870 49.000 2.08e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium6213g00003 B3 2.1e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6213g00003 K09287 - gmx:100778733 631.713