Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6213g00002 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAAGAGGAAGAGGAGACAGCAGAAGAAATCGTCACAAGAGAAGAAAGCAGCAGTAAGCACCACTACCCCTTTTCTTCTCCCTCTTTGTCTTTATCTCCTGCTCCTTCAATATCAAATTATACTTCTACTACTTCTGCTGCACGTCCTCATCACCATCATCATGTAATAAATATTCCTCACCAACAAAATCCATGGCTGGGGATGAATATTCATGATCATGATCATCATCTTCAGTCTCCAGAGACCACTGAATCTCACAATTCATCATCTGGGCTAGGGTTGTTACACCAGGATGCAGCAGCTTCCAATTTCGTCATCGGCAATCATCATAATCATCATCATCATCATCATCATCACCACACAACAAAGCAGCTAGATTTCATGGACTTGACACTGGGGAGCAGCAAGGATGAGGGGAATTTGCAAGGATCGGGAGGTGCTGCTTCTTCTGTGTTTGGTCATCATGCAAGTGGTAGTTCTTCTGCCGATGGTAACGTTAACAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACACCGAGTGATGTGGGTAAGCTGAACCGATTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGCTGCTCAATTTTGAGGACAGAAATGGTAAGTCATGGAGGTTCAGGTACTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAACTTGATGCCGGTGACATTGTGTCCTTCCAGCGTGGTGTAGGGGATTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCCGATCACCATCACCACCATGGCCCTGACCCTTCAGCCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCAACACTTCATCAGATGGGGTGCCACTGGAAGATTCTACTCCCTCCCCTCGCCAAACCCACCACGCCACCATGACCATTTGCAACAACACCTCAATTACAACACCATGTATCATCAACATCATCATCCCTTTCATCACCAATTGCAAGGTGCTGCTGGTGCTGGAGGAAATGGAACTCATCACTACAACAACTATCATGACATGAGTAGTTCAGGATCTGGCTCGGTCTATTACCTCAGGTCAACACCCCCACCAATGCCATTCACTGATCACCAAACCTTGAACACAAGACAACAACAACAAGAGGGAGGCAATGTTTCTCATCCTCCTATAATCATTGATTCTGTTCCAGTTGCTCACCACCACCATCATCACCAGCACCACCGTGGTGGCAAGAGTGGTGGTTCTAGTACTAGTACAAGTCCTAGCACTGCAGGCAAAAGACTTAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGACCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGCGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGAACAACCTTCAATGCTTTTTGATCTGGATCCTTCTTTGCAATACCGGCAGTGA 1674 0.4648 MELMQEVKGYSDSREEEEEEETAEEIVTREESSSKHHYPFSSPSLSLSPAPSISNYTSTTSAARPHHHHHVINIPHQQNPWLGMNIHDHDHHLQSPETTESHNSSSGLGLLHQDAAASNFVIGNHHNHHHHHHHHHTTKQLDFMDLTLGSSKDEGNLQGSGGAASSVFGHHASGSSSADGNVNNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLYRHRLYIDWRRRPDHHHHHGPDPSATLFTPFFLPNQQHFIRWGATGRFYSLPSPNPPRHHDHLQQHLNYNTMYHQHHHPFHHQLQGAAGAGGNGTHHYNNYHDMSSSGSGSVYYLRSTPPPMPFTDHQTLNTRQQQQEGGNVSHPPIIIDSVPVAHHHHHHQHHRGGKSGGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHATMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEQPSMLFDLDPSLQYRQ 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6213g00002 557 SMART B3_2 195 300 IPR003340 GO:0003677
Vium6213g00002 557 SUPERFAMILY DNA-binding pseudobarrel domain 191 296 IPR015300 -
Vium6213g00002 557 Gene3D - 189 307 IPR015300 -
Vium6213g00002 557 ProSiteProfiles B3 DNA-binding domain profile. 195 300 IPR003340 GO:0003677
Vium6213g00002 557 MobiDBLite consensus disorder prediction 1 66 - -
Vium6213g00002 557 CDD B3_DNA 193 282 IPR003340 GO:0003677
Vium6213g00002 557 FunFam B3 domain-containing protein 188 308 - -
Vium6213g00002 557 Pfam B3 DNA binding domain 195 299 IPR003340 GO:0003677
Vium6213g00002 557 MobiDBLite consensus disorder prediction 154 193 - -
Vium6213g00002 557 MobiDBLite consensus disorder prediction 503 557 - -
Vium6213g00002 557 MobiDBLite consensus disorder prediction 84 108 - -
Vium6213g00002 557 MobiDBLite consensus disorder prediction 154 189 - -
Vium6213g00002 557 MobiDBLite consensus disorder prediction 413 429 - -
Vium6213g00002 557 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 495 IPR044800 GO:0003700
Vium6213g00002 557 MobiDBLite consensus disorder prediction 37 62 - -
Vium6213g00002 557 MobiDBLite consensus disorder prediction 413 468 - -
Vium6213g00002 557 MobiDBLite consensus disorder prediction 503 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6213g00002 Vium-Chr6213 25718 28201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6213g00002 186 484 RAV Transcription Factor Family AT2G46870 49.000 6.04e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium6213g00002 B3 2.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6213g00002 K09287 - gmx:100781424 676.011