Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6211g00004 ATGGAGGAAATCGAAGTGCCTCAATACTTCATCTGCCCCATATCCCTCCAAATCATGAACGACCCCGTTACGGCCATAACGGGCATAACTTACGACCGAGAAAGCATTGAACAATGGCTATTCAATAACAAGAATAGCACCTGCCCCGTTTCCAAACAACTCCTCCCAAGAGATTCTGATCTAACCCCTAACCACACCCTTCGACGCTTGATCCAAGCCTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGCATTCCCACTCCTAAGCCTCCTCTCAACACCCTTCAAGTCCTTAAACTCCTCAAACATCTCCATCATCACAAAACCTTCGTTCAGTTGGAACTCCTTGCCGTCGAGAACGACAGAAACAAGAAGTGCTTGCTAGAAGCAGAGGTCCCTAGGGCCATGATCATCTTCATCATCAATTGCTATAGAAACAATCATATCCAAAAGGGTCTCCAAGAAGCTCTTAGCATATTGCAGTTTGTCAAGATCCCCAAGAAGGAATGGCCGCTGCTCGTGAAGGACCACGACCAGATAATGGATTCTCTAGCATGGATTCTGTGTCGTGAGGGACTGGAGAACTCCGTTGCAGTGAAATCCCATGCGCTTCTACTTCTGAAGAAGATCATCAACAAGGGCGACACGTGTCACGTTCTGGAGAGGCTGAAACCCGAATTCTTCGAAACAATGGTGAAGATTCTGAGACACGGAGTGACCCAACAAGGAACGAGTGCCGCACTTCACGTTCTGCTGAGCGCTTCTTCTTCGACGCGGAACAGGATCATGATGGTGGAAGCAGGTGTGGTACACGAAGTGGTGGAGATCGAAATGGGGGCGCCGGAGAAGAGAGTGACGGAACTGACGCTGGCTATATTGTTCCACTTGTGTTGTTGCGCCAACGGGAGAGCCAAGTTTTTGAGCCACGAAGGGGCCATCGCGGTGGTGACGGAGAGGATTCTGAAGGTGTCTGCGGCGGTGGACGATAGGGCGGTGTTTGTTTTGGCGATGGTGGCTAAGTTTTCGGGGACGAAGGTGGTTTTGCAGGAGATGTTGAAGGCGGGAAGCATGGCGAAGCTTTGCATGGTGCTTCAGGCTGATAGGGCAAAGTATTTGAAGGACAAAGCCATGGAAATTCTGAAGGAACACTCGGAGCTTTGGAGCGACTCGCCTTGCTTTCCTCGTTCGTCGTTTTGTGCCTACGTTCCCTACTGA 1218 0.5041 MEEIEVPQYFICPISLQIMNDPVTAITGITYDRESIEQWLFNNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNTLQVLKLLKHLHHHKTFVQLELLAVENDRNKKCLLEAEVPRAMIIFIINCYRNNHIQKGLQEALSILQFVKIPKKEWPLLVKDHDQIMDSLAWILCREGLENSVAVKSHALLLLKKIINKGDTCHVLERLKPEFFETMVKILRHGVTQQGTSAALHVLLSASSSTRNRIMMVEAGVVHEVVEIEMGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKAGSMAKLCMVLQADRAKYLKDKAMEILKEHSELWSDSPCFPRSSFCAYVPY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6211g00004 405 SUPERFAMILY ARM repeat 114 371 IPR016024 -
Vium6211g00004 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vium6211g00004 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vium6211g00004 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Vium6211g00004 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vium6211g00004 405 PANTHER WDSAM1 PROTEIN 2 395 IPR045185 GO:0061630
Vium6211g00004 405 Gene3D - 91 390 IPR011989 -
Vium6211g00004 405 CDD RING-Ubox_PUB 7 58 IPR045210 -
Vium6211g00004 405 SUPERFAMILY RING/U-box 3 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6211g00004 Vium-Chr6211 38864 40701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6211g00004 2 394 U-box Gene Family AT3G11840 40.816 9.48e-113 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6211g00004 - - gmx:100798446 618.616