Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6211g00001 ATGGCGACATATTTTCAAAGCAACCCCAAAATTCAAGCAGGTGCTGACGGTCTTCAAACTCTCGTACTAATGAACCCTGACTATGTCCAATACTCCGACGCGCCGCCGCCACCCCACGGCGGAAACCACTTGTTTCTCAACTCCGCCGCCACCGTTGCCAACAACTCCTCCCTACTGAATCTCCCTCACGCGCCGTCCCCTCACGCGCCGTCCCCTCACGCGCCGTCCCCTCACGCGCCGTCCCCTCACACTCAGCAATTCGTCGGCGTGCCTCTCTCCGCAGCAGCGCAGGAGCCGCCGCCGTCCATGCCCCATGACGTCTCCGCCCTGCATGGCTTCCTGCCACGCATGCAGTACAACCTTTGGAACACAATTGACCCCAGCACGGCGGCGCGTGATGCCACACTCGCTTCCCAGGGACTGTCACTTAGCCTTCACGGTGAGGAGGTGCGTCCAAGGTCATCCTCCGCCCCTGGGGCCTCCAACGGCGGCGGTATGGCGGGGATTCAGAGTGTTCTCTTGAGTTCCAAGTTCTTGAGGGTCACGCAAGAACTTCTGGACGAGATTGTGAATGTTAACAGCGGAATTAAGGTTGAACAAGGGAAGCAAAGCTTCGAGAAAACTAAGGCGGTTGGAGAATCATCAACCGCTGCTAGTGGTGACGGCGGAGAGGCATGTGGGAAACGTAGCTCTGAACTGTCTACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGACGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACAGCCTCCTTTGAGCAAGTTGCAGGGATTGGTTCTGCGAGGACGTACACAGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCTATAACAGGTCAAATCAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTGTTTTGGGGCTAAAGTTGAAGGTTCTAGGCTGAAATACGTGGACCATCATCTACGCCAACAGAGAGCTATTCAACAGTTGGGTATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTACGTGCTTGGCTCTTTGAACACTTTCTCCACCCCTACCCCAAGGACTCCGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTATTTGGAGGAGATGAAAGAACACGAACTAAATGGAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCCGCGAAGAAACGAGAGAAACGTCCTACCCCTGAGATTGAATCAAAAGGTTCTAAACAAGATGTTTCTAATTCAATAGCTTCAACTTCACCATCAACATCAGCACCTGTAGTGGGTAATGTGAAGAATCAATCAGGATTCAGTTTCATGGGGTCATCAGAGTTAGATGGAATCACACAAGGAAGCCCCAAGAAGCCAAGGAACCATGAAATCCTACTCTCTCCAAATCGGGCTTCTTCAATGAGCATGGATGTTAAAAGCAATGAGGCCAACAATGAGCAACAGCTTTCAATGGAGGAGAGACAGAGCAGGGATGGGTACTCTTTCATGGGGAGCCAAACAAACTTCACAGGTGGTTTTGGACAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAAGAATTCACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACACATTGTCAGGAACACATCAAACCTTTCTCCCAAACCAGAACATTCAGCTAGGAAGAGGGTTGGACATTGGTCAACCGAATCAGTTTGGTGTGTTGAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGGTACTGGACTTTGTGGCATAA 1992 0.494 MATYFQSNPKIQAGADGLQTLVLMNPDYVQYSDAPPPPHGGNHLFLNSAATVANNSSLLNLPHAPSPHAPSPHAPSPHAPSPHTQQFVGVPLSAAAQEPPPSMPHDVSALHGFLPRMQYNLWNTIDPSTAARDATLASQGLSLSLHGEEVRPRSSSAPGASNGGGMAGIQSVLLSSKFLRVTQELLDEIVNVNSGIKVEQGKQSFEKTKAVGESSTAASGDGGEACGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTASFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGAKVEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGNGSEEKSSKSGEDPAKKREKRPTPEIESKGSKQDVSNSIASTSPSTSAPVVGNVKNQSGFSFMGSSELDGITQGSPKKPRNHEILLSPNRASSMSMDVKSNEANNEQQLSMEERQSRDGYSFMGSQTNFTGGFGQYPMEEIGRFDAEEFTPRFSGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGQPNQFGVLNNSTSHSSAAFESINMQNPKRFAAQLVLDFVA 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6211g00001 663 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 440 - -
Vium6211g00001 663 SMART HOX_1 354 418 IPR001356 GO:0003677
Vium6211g00001 663 CDD homeodomain 354 415 IPR001356 GO:0003677
Vium6211g00001 663 ProSiteProfiles 'Homeobox' domain profile. 351 414 IPR001356 GO:0003677
Vium6211g00001 663 MobiDBLite consensus disorder prediction 65 79 - -
Vium6211g00001 663 MobiDBLite consensus disorder prediction 58 85 - -
Vium6211g00001 663 MobiDBLite consensus disorder prediction 426 459 - -
Vium6211g00001 663 SUPERFAMILY Homeodomain-like 355 421 IPR009057 -
Vium6211g00001 663 MobiDBLite consensus disorder prediction 145 164 - -
Vium6211g00001 663 MobiDBLite consensus disorder prediction 203 238 - -
Vium6211g00001 663 Coils Coil 238 272 - -
Vium6211g00001 663 Pfam Associated with HOX 172 305 IPR006563 -
Vium6211g00001 663 Pfam Homeobox KN domain 371 410 IPR008422 GO:0003677|GO:0006355
Vium6211g00001 663 MobiDBLite consensus disorder prediction 426 483 - -
Vium6211g00001 663 SMART prehox3 167 306 IPR006563 -
Vium6211g00001 663 MobiDBLite consensus disorder prediction 460 483 - -
Vium6211g00001 663 Gene3D - 350 427 - -
Vium6211g00001 663 FunFam BEL1-like homeodomain protein 9 357 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6211g00001 Vium-Chr6211 15336 19460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6211g00001 1 663 Homeobox Transcription Factor Family AT2G35940 48.033 2.79e-167 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium6211g00001 POX 4.8e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6211g00001 - - gmx:100810851 1044.65