Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6207g00009 ATGGGTAGTGTAGATCACGAGGACCCTCTGGAAGCTGAGAGCGTTCAGCATCATCAGCAGCAGCAAGTAGAGGTTCCTCCACCTCAACCCTTTTTCAAGTCTCTAAAGATCTCCTTGAAGGAGACTTTCTTCCCAGACGACCCTTTGAGACAGTTCAAAAACAAGCCACCCTCCAAAAAGATCATGCTTGCTATTCAGTATTTCTTCCCCATCTTCCAATGGGCACCCAAATACACCTTCAACTTCTTCAAAGCTGACCTCATAGCTGGCATCACCATAGCTAGCTTGGCCATTCCTCAAGGCATCAGCTATGCCAAGCTCGCCAACCTCCCTCCTATCCTCGGACTATATTCAAGCTTTATACCACCTTTGATTTATGCCATGATGGGAAGCTCAAGGGATTTGGCGGTGGGGACGGTGGCGGTTGGATCGCTTCTGATGGGTTCCATGTTGAGTGATGTGGTTAATCCCAACGAAGACCCACAGCTTTACCTACACCTTGCCTTCACTGCTACATTATTTGCTGGAATTTTTGAGGCTGCTTTGGGTTTGTTTAGGTTGGGGTTGATAGTTGATTTTCTGTCACATGCAACCATAGTAGGGTTCATGGGAGGAGCAGCTACAGTGGTTTGTCTGCAGCAACTAAAATCGATTCTGGGCCTTGTGCATTTCACCCATGGAGCTGATATCATATCAGTGATGCGCTCTGTTTTCACCCAAACTCATGAGTGGAGGTGGGAAAGTTCTGTGTTAGGATTTGTCTTCATCTCCTTCCTCCTTATCACTAGATACTTTAGCAAAAAACGACCAAGGTTTTTCTGGGTGTCAGCAATGGCGCCGTTAACATCGGTTATATTGGGAAGTCTGTTTGTTTATTTCACTCATGCCGAGAGGAACGGAGTTGAAGTGATAGGAGAATTGAAGAAGGGTTTAAATCCACCATCGGTATCAAAGCTGGTTTTTGTGTCACCTTATATGGCCACAGCTGTGAAAACTGGCATTGTTGTTGGCATCATATCACTAGCAGAAGGAATAGCAGTGGGAAGAAGCTTTGCAATGTATAAAAATTACAATATCGATGGCAATAAAGAGATGATAGCTATGGGTACCATGAACATAGTTGGTTCTTTCACCTCTTGCTACATCACAACAGGGCCATTTTCACGCTCAGCCGTCAACTATAACGCTGGATGCAAAACAGCAGCTTCCAACATTATAATGTCAATAGCAGTGATGTTGACATTGCTATTCCTAACACCCTTGTTCCATTACACTCCCCTGGTGGTGCTGTCAGCCATTATTGTATCTGCAATGCTTGGCCTCATAGATTATGAAGCAGCCATCCATCTCTGGAAGATTGATAAATTTGACTTTGTTGTGTGCATGAGTGCATACATTGGCGTGGTCTTTGCCAGTGTTGAAATTGGCTTAGTCATAGCTGTTGCAATTTCTCTACTTAGGGTACTGCTTTTCATTGCAAGGCCAAGGACATTCGTTTTGGGAAACCTTCCAAATTCTGGGATTTACAGAAATGTTGAGCACTATCCAAATGCAAAACATGTTCCTGGAATCCTCATCCTAGCCATTGATGCACCGATTTACTTTGCCAATGCAGGCTATTTAAGAGAAAGGATCACAAGGTGGGTTGATGAAGAAGAAAGCAGAATCAAAGCTACTGAAGAGACAAGTTTGCAGTATGTTATAATGGATATGAGTGGTGTTGGAAACATTGATACAAGTGGAATAAGTATGCTTGAAGAAGTCAAGAAGATTACTGAGAGAAGAGAACTTCAACTTGTTTTGGTGAATCCGGGAAGCGAGGTGATGAAGAAACTGAACAAATCCAAGTTCCAAAATCATTTAGGAGAGAGATGGATCTATTTAACTGTTGAAGAGGCCGTTGGAGCATGCAACTTCAATCTCCATTCAAGAACGAATATGAAGAACGATGAATCGGAGGGTTGGAACAATGTTTGA 1977 0.4335 MGSVDHEDPLEAESVQHHQQQQVEVPPPQPFFKSLKISLKETFFPDDPLRQFKNKPPSKKIMLAIQYFFPIFQWAPKYTFNFFKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMGSMLSDVVNPNEDPQLYLHLAFTATLFAGIFEAALGLFRLGLIVDFLSHATIVGFMGGAATVVCLQQLKSILGLVHFTHGADIISVMRSVFTQTHEWRWESSVLGFVFISFLLITRYFSKKRPRFFWVSAMAPLTSVILGSLFVYFTHAERNGVEVIGELKKGLNPPSVSKLVFVSPYMATAVKTGIVVGIISLAEGIAVGRSFAMYKNYNIDGNKEMIAMGTMNIVGSFTSCYITTGPFSRSAVNYNAGCKTAASNIIMSIAVMLTLLFLTPLFHYTPLVVLSAIIVSAMLGLIDYEAAIHLWKIDKFDFVVCMSAYIGVVFASVEIGLVIAVAISLLRVLLFIARPRTFVLGNLPNSGIYRNVEHYPNAKHVPGILILAIDAPIYFANAGYLRERITRWVDEEESRIKATEETSLQYVIMDMSGVGNIDTSGISMLEEVKKITERRELQLVLVNPGSEVMKKLNKSKFQNHLGERWIYLTVEEAVGACNFNLHSRTNMKNDESEGWNNV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6207g00009 658 MobiDBLite consensus disorder prediction 1 26 - -
Vium6207g00009 658 SUPERFAMILY SpoIIaa-like 516 637 IPR036513 -
Vium6207g00009 658 PANTHER SULFATE TRANSPORTER 32 647 IPR001902 GO:0016020|GO:0055085
Vium6207g00009 658 ProSiteProfiles STAS domain profile. 514 637 IPR002645 -
Vium6207g00009 658 CDD STAS_SulP_like_sulfate_transporter 515 630 - -
Vium6207g00009 658 Pfam STAS domain 515 633 IPR002645 -
Vium6207g00009 658 NCBIfam sulfate permease 70 633 IPR001902 GO:0016020|GO:0055085
Vium6207g00009 658 ProSitePatterns SLC26A transporters signature. 112 133 IPR018045 GO:0008271|GO:0008272
Vium6207g00009 658 FunFam Sulfate transporter 31 494 640 - -
Vium6207g00009 658 Pfam Sulfate permease family 83 463 IPR011547 GO:0016020
Vium6207g00009 658 Gene3D STAS domain 494 640 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6207g00009 Vium-Chr6207 140021 146493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6207g00009 13 643 Inorganic Solute Cotransporters AT4G02700 66.297 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6207g00009 K17471 - gmx:100810196 1176.39