Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6200g00016 ATGGCTATATATATGTCTCAGGTTGCTAAATGCATACACAGTAAACAAACCAAGAATCACAAAAGTGAAGAGAAAGCGAAAGAAGCAGTTATTTACTCATACAACAAACACATAAATGGGTTTGCAGCAATGCTGGAAGAGGAAGAAGCAGCACATATCGGCAAAAAGCCGAACGTGGTGTCAGTGTTCTTGAGCAATAAACATAAACTGCACACTACCCGTTCATGGGAATTTCTTGGACTACACAGAAATGGTAAGAACTCCGCATGGCAAAAGGGAAACTTTGGTGAAAATACAATAATCGCAAACATCGACACTGGTGTTTGGCCAGAGTCAGAGAGCTTCAGTGATGAAGAATATGGTCCCGTTCCCTCCAAATGGCGTGGTGGTAATGTCTGTCAAATTAACAAATTTTTAAGCAACAAGACAAATCTATGCAACAGAAAGCTGATAGGAGCAAGATTCTTCAACAAAGCTTTCCAGGCATTTAACGGCCCACTTGTTGCCCCGCTACAAACAGCGCGTGACTTCATGGGACATGGGACCCACACTTTATCAACAGCTGGGGGCAATTTCGTCCCAGGCGCCAGTGTATTTGCGATGGGTAATGGCACCGCAAAGGGTGGGTCCCCGAGAGCACGAGTTGCAGCGTACAAAGTGTGTTGGAATCTGGCGGACCCGACCGGTTGTTACGGCGCAGATGTGTTGTCTGCTATCGACCAAGCCATCGACGACGGTGTCGATCTCATAAATCTTTCAGTTGGTGGATTTCACGACGTGACCCCCGAAGGAATACTCACCGACGAGGTTTCCATTGGAGCCTTCCATGCGATTTCTAACAACATACTTTTAGTAGCCTCTGCTGGAAACGATGGACCAGTACCTGGTTCTGTGGTGAACGTGGCACCTTGGGTCTTTACCATTGCTGCTAGCACTATAGACAGAGACTTTAGCAGTACCATAACCATCAACAACAATCAACAGATCGAGGGAGCGAGTCTTTTCGTAAATTTGCCACCGAATCAGGCCTTTTCGCTGATCCTCTCCACCGATGCTAAACTTCCTAATGCTACATTTCGAGATGCTCAACTGTGTAGAGCAGGAACACTGGATCCAAGAAAAGTGAATGGGAAAATAGTGTCATGCAGTCGGGAAAAGATAAAATCTGTTGCGGAGGGTCAGGAAGCTTTATCTGCAGGTGCAAAGGGAATGATTGTGAGCAATCAACCGCAACAGGGAACTACACTTGAAGCTGAGCCCCATGTTTTCTCCGCTGTGGGCCACCCTTCCGACCATGGCAACCCACAATCCGATCATATAAGTCCTCCTCCCCATGCTGCTATAGACACTGTACCTACAGAATTTCAAATAGCTGACACGGACCCTTTTAAATCAGGTGCTACCATAAAATTGTCTCCAGCACGAACATTATTTGGAAGAAAGCCAGCTCCAGTTATGGCTTCATTCTCATCTAGGGGACCCAATAAGATGCAGCCAGCAATTCTCAAGCCAGATGTCACTGCGCCTGGTGTGGACATACTTGCTGCCTATTCAGAATTCGCAAGTGCATCAACCTTGCTAACAGACAAACGTCGTGGATTTAAATTCAACGTAATGCAAGGAACTTCTATGTCTTGCCCTCATGTTACTGGCATCGCTGGACTTATCAAAACACGTTATCCTAAATGGAGCCCTGCTGCTATAAAGTCAGCAATCATGACCACAGCAACCACACTTGACAACACTAAAAGAAAAATACATGACGGGTTTGTGAAAACAGTGGCAGATCCCTTTGCTTATGGTTCAGGACATGTTCAACCTGATCTTGCCATAGATCCCGGCCTCGTTTACGATCTAGGCCTCACTGATTACTTGAACTTCTTATGCGCTTCTGGATACAACCAAAAACTCATTTCTGCTCTCAATTTCCATAAAACTTTCATTTGTTCAGGCACTCACAGTGTAACAGATTTGAACTACCCTTCAATCACATTGCCAAATCTACGCTTAAAAGCTGTAACCATTGCTCGCACAGTAACAAATGTTGGGCCACCAAGCACATACACTGCCAGCGTCCAATTGCTTGGATATAACATTACCGTTGTGCCAAGTTCCTTGACTTTCAGCAAAACTGGTGAAAAGAAGACATTCAAGGTTACTGTGCAGGCAAGCAGTGAAACAAAGCGGAGAACCTATGAATTTGGGGAATTGCGATGGACAGATGGAAAACATATAGTAAGGAGTCCTATTACAGTAAAACGCAGATAA 2268 0.4511 MAIYMSQVAKCIHSKQTKNHKSEEKAKEAVIYSYNKHINGFAAMLEEEEAAHIGKKPNVVSVFLSNKHKLHTTRSWEFLGLHRNGKNSAWQKGNFGENTIIANIDTGVWPESESFSDEEYGPVPSKWRGGNVCQINKFLSNKTNLCNRKLIGARFFNKAFQAFNGPLVAPLQTARDFMGHGTHTLSTAGGNFVPGASVFAMGNGTAKGGSPRARVAAYKVCWNLADPTGCYGADVLSAIDQAIDDGVDLINLSVGGFHDVTPEGILTDEVSIGAFHAISNNILLVASAGNDGPVPGSVVNVAPWVFTIAASTIDRDFSSTITINNNQQIEGASLFVNLPPNQAFSLILSTDAKLPNATFRDAQLCRAGTLDPRKVNGKIVSCSREKIKSVAEGQEALSAGAKGMIVSNQPQQGTTLEAEPHVFSAVGHPSDHGNPQSDHISPPPHAAIDTVPTEFQIADTDPFKSGATIKLSPARTLFGRKPAPVMASFSSRGPNKMQPAILKPDVTAPGVDILAAYSEFASASTLLTDKRRGFKFNVMQGTSMSCPHVTGIAGLIKTRYPKWSPAAIKSAIMTTATTLDNTKRKIHDGFVKTVADPFAYGSGHVQPDLAIDPGLVYDLGLTDYLNFLCASGYNQKLISALNFHKTFICSGTHSVTDLNYPSITLPNLRLKAVTIARTVTNVGPPSTYTASVQLLGYNITVVPSSLTFSKTGEKKTFKVTVQASSETKRRTYEFGELRWTDGKHIVRSPITVKRR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6200g00016 755 FunFam Subtilisin-like protease SBT1.5 98 327 - -
Vium6200g00016 755 Gene3D - 628 754 - -
Vium6200g00016 755 Gene3D - 314 478 - -
Vium6200g00016 755 Gene3D Peptidase S8/S53 domain 99 624 IPR036852 GO:0004252|GO:0006508
Vium6200g00016 755 Pfam Fibronectin type-III domain 657 752 IPR041469 -
Vium6200g00016 755 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 4 71 IPR037045 -
Vium6200g00016 755 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 22 752 IPR045051 -
Vium6200g00016 755 Pfam PA domain 364 432 IPR003137 -
Vium6200g00016 755 ProSiteProfiles Serine proteases, subtilase domain profile. 75 611 - -
Vium6200g00016 755 CDD Peptidases_S8_3 68 577 IPR034197 -
Vium6200g00016 755 CDD PA_subtilisin_like 320 426 - -
Vium6200g00016 755 PRINTS Subtilisin serine protease family (S8) signature 540 556 IPR015500 -
Vium6200g00016 755 PRINTS Subtilisin serine protease family (S8) signature 96 115 IPR015500 -
Vium6200g00016 755 PRINTS Subtilisin serine protease family (S8) signature 176 189 IPR015500 -
Vium6200g00016 755 SUPERFAMILY Subtilisin-like 70 615 IPR036852 GO:0004252|GO:0006508
Vium6200g00016 755 ProSitePatterns Serine proteases, subtilase family, serine active site. 541 551 IPR023828 -
Vium6200g00016 755 Pfam Subtilase family 96 588 IPR000209 GO:0006508|GO:0008236
Vium6200g00016 755 Pfam Peptidase inhibitor I9 5 71 IPR010259 -
Vium6200g00016 755 FunFam Subtilisin-like protease SBT1.5 628 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6200g00016 Vium-Chr6200 103911 108912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6200g00016 22 753 Subtilisin-like Serine Gene Family AT2G04160 51.220 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6200g00016 - - gmx:100813564 1114.75