Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6200g00015 ATGGAATCCATCAAGATTCTAGCCTTATGGAGGATTCTCTCTTACTTTCTTTTGGCCATTCTAACACACTTTTCACTCCAACTTGCTTGGTTTTCCAAAACAGTAGTTTTGGCCTCTGCTGCCAGCACAAGAACTGTTGGTGATGAAGCTGCAACTGATAACAGTGAGGCAAATGCACTGTTAAAGTGGAAATACAGCTTTGATAATAGCAGCCAAGATCTCTTATCAACTTGGACAGGTTCTACTTCATGCCAATGGGAAGGAATTCATTGCAACGATTCCAAGTCCATCTCCACCATAGATCTTTCAAATTATGGTCTCATAGGTACCCTTCACACCCTCAATTTCTCAGCTTTTCCTAACCTACTCATCCTAAATATCTATAACAACTCCTTTTATGGGACCATTCCACCACAAATTGGTAACATGACCAGAGTAAATGTTTTGAATCTTTCTACAAATTATTTCAATGGTTCCATCCCTCAACAAGTGTGGACACTAAGGAGTTTACAAGGCCTTGATCTGTACAAATGTCAACTAAGCGGTGAGATTCCTAATTCCATAGCAAACCTGTACAATTTGACATATCTAGATTTAGGCATAAACAGTTTTTCTGGCCATATTCCACCAGAGATTGGAAAGTTGTACAAGGTAGAGTTTCTAAATCTTAAATTTAATAAGTTTTCTGGTTCCATTCCTCAAGAAATTTCAATGTTGAGAAACCTTAAGAATATTGATTTGTCAAGAAATTCTCTCTCTGGTACTATCCCTGAAACAATAGGCAACATGTCTAGTTTAAATTTGCTTCGCCTTTCCAATAACTCCCTTTTATCTGGGCCAATTCCATCCTCCTTATGGACCATGTCTAACTTGACCTTGCTCTTTCTTGATAACAATAATCTTTCTGGATCAATCCCTGCTTCCATAGAAAACTTGGCCAATTTAGATACACTTGGACTTGATTACAACCACCTTTCTGGACCTATTCCTTCCACAATTGGAAACCTGACCAAGCTCACCAGGTTGTTTTTACGCTCTAACAATCTTTCTGGATCAATTCCTCCCTCTATAGGAAACTTGATCAATTTGAAAGTACTTAGTCTCCAAATCAACAATCTCACCGGAACAATTCCTGCCACAATTGGAAATTTGAAAAACCTCACTATTTTAGAACTGTCCTTCAACAAACTCAATGGCAGTGTTTCACAAGTCTTGAATAACATTCTGAACTGGTCTATGGTGTTACTTGCTGAGAATGATTTCACAGGCCATTTGCCACCTCAAATTTGCTCTGCTGGGACCCTAAACTCCCTTAGTGCTCACCACAACCGTTTCACCGGTCCGGTGCCAATAAGCTTGAAGAACTGTTCTAGTGTTACTAGACTCAGGTTGGAAGGGAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAACAAGTTTTATGGCCAAATTTCATCAAACTGGGGGAAGTGTCCTAATCTTGGTACCTTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAGTCGAACTTGCTGAGGCAACCAAACTTGGCAAGCTTCACCTTTCTTCTAATAACTTGAAGGGAAAGATTCCAAAGGAATTAGGGAATATGAAATCGTTAATTGAACTTGAGATTAGCAACAACCATCTTTCTGGTGACATTCCCAAAGAAATTGGATCAGTACAAATTCTTGAAGATTTGGATCTTGGAGGTAACCAGTTGAGTGGAACAATACCGAGAGAAGTTGTAGAATTGCCCAACTTACGAAGGTTGACTTTGAGCAATAATAAAATAAACGGAACTATTCCCCTGGAGTTTCGCAAATTTCAGCCTCTTGAATATCTTGATCTTAGTGGGAATTTGTTGAGTGGAACAATACCAAAACAGCTTGGAGAGGTGACGAAACTGCAGTGGCTTAATCTCTCTCACAACAGTCTTTCTGGAAACATTCCATCCAGTTTTGATGGCGTTTCAGGTTTGATTTCTGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCAAATAACGAAGCCTTTCTAAATGCTTCGATTGAATCATTGAAAAATAACAGAGACTTGTGTGGCAATGTCACTGGCTTAATGCGTTGCCCAGCCAACCACAGTCGGAAGAGGCACAAGGGCATTCAAATAGCATTATTTATTTTCTTGGGTGCTCTTGTTCTAGTGTTATGTGGGGTGTCAGTTTCAATGTATATTCTCTGTCGAAAAGCAAGAAAGGAAGATATACATGGTAAAGAAAATGTGCATTCCGGAAACAGACTCACTGGAGAAGTGTTTTCCATATGGAGTCACGATGGAAAAATTATGTTTGAACACATCATTGAAGCAACCGATAATTTCAACGAAAAATATCTGATTGGACTTGGAGGGCAAGGATCGGTTTACAAAGCTGAGATGTCAACAGGCCAGGTTTTTGCGGTGAAGAAACTTCACATGGAAACAGATGAAGAGAAGCCTAATTTTAAAGCTTTTGAAAACGAAATTCAAGCTTTGACAGAAATCAGGCACCGTAACATTGTAAAGCTATGTGGATTTTGCTCACATTCACGGTTCTCCTTTTTGGTCTACGAGTTCTTGGAAGGGGGTAGCTTGGATCAAGTACTAATCAATGAAAAAAAAGCAGCTTCATTTAACTGGGAAGAGAGAGTAAATGTTGTTAAAGGTGTGGCCCATGCTTTATCCTATATGCATCAGGATTGCTCACCACCAATAATTCATCGAGACATATCCAGCAAGAATATTCTTTTAGATTCACAAAAAGAACCTCATGTCTCTGATTTTGGGACAGCTAAGATTCTAAAACCTGGTGCAAGCACTTGGACCACATTTGCAGGCACCTTTGGTTATGCAGCTCCAGAGTTTGCCCAGACAATGGAAGTGACTGAGAAATGTGATGTATTCAGTTTTGGAGTTCTTTGTCTAGAAATCATCATGGGGAAACATCCGGGGGATCTCATATCTTCCTTGTTATCTTCATCTTCAGCAGCAATAACTCATAACTTGCTACTAATTGATGTGATAGACCAAAGACCTCCTCTTCCTCTTAAATCGGTTGTTGGGGATGTCATTTTGGTTGCAATCTTGGCATTTTCTTGCTTGAGTGAAAATCCATGTTCTCGACCAACAATGGATCAAGTGTCCAAAAAGCTTATGATGGGTAAGTCACCTTTAGCAGATGAGTTCCCTAATATCAGACTTGCACAACTCCTCCAAAGCAGTATTTAA 3294 0.394 MESIKILALWRILSYFLLAILTHFSLQLAWFSKTVVLASAASTRTVGDEAATDNSEANALLKWKYSFDNSSQDLLSTWTGSTSCQWEGIHCNDSKSISTIDLSNYGLIGTLHTLNFSAFPNLLILNIYNNSFYGTIPPQIGNMTRVNVLNLSTNYFNGSIPQQVWTLRSLQGLDLYKCQLSGEIPNSIANLYNLTYLDLGINSFSGHIPPEIGKLYKVEFLNLKFNKFSGSIPQEISMLRNLKNIDLSRNSLSGTIPETIGNMSSLNLLRLSNNSLLSGPIPSSLWTMSNLTLLFLDNNNLSGSIPASIENLANLDTLGLDYNHLSGPIPSTIGNLTKLTRLFLRSNNLSGSIPPSIGNLINLKVLSLQINNLTGTIPATIGNLKNLTILELSFNKLNGSVSQVLNNILNWSMVLLAENDFTGHLPPQICSAGTLNSLSAHHNRFTGPVPISLKNCSSVTRLRLEGNQLEGDIAQDFGVYPNLEYIDLSDNKFYGQISSNWGKCPNLGTLKISNNNISGGIPVELAEATKLGKLHLSSNNLKGKIPKELGNMKSLIELEISNNHLSGDIPKEIGSVQILEDLDLGGNQLSGTIPREVVELPNLRRLTLSNNKINGTIPLEFRKFQPLEYLDLSGNLLSGTIPKQLGEVTKLQWLNLSHNSLSGNIPSSFDGVSGLISVNISYNQLEGPLPNNEAFLNASIESLKNNRDLCGNVTGLMRCPANHSRKRHKGIQIALFIFLGALVLVLCGVSVSMYILCRKARKEDIHGKENVHSGNRLTGEVFSIWSHDGKIMFEHIIEATDNFNEKYLIGLGGQGSVYKAEMSTGQVFAVKKLHMETDEEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHSRFSFLVYEFLEGGSLDQVLINEKKAASFNWEERVNVVKGVAHALSYMHQDCSPPIIHRDISSKNILLDSQKEPHVSDFGTAKILKPGASTWTTFAGTFGYAAPEFAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLISSLLSSSSAAITHNLLLIDVIDQRPPLPLKSVVGDVILVAILAFSCLSENPCSRPTMDQVSKKLMMGKSPLADEFPNIRLAQLLQSSI 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6200g00015 1097 FunFam MDIS1-interacting receptor like kinase 2 882 1079 - -
Vium6200g00015 1097 ProSitePatterns Tyrosine protein kinases specific active-site signature. 927 939 IPR008266 GO:0004672|GO:0006468
Vium6200g00015 1097 Pfam Leucine rich repeat 240 301 IPR001611 GO:0005515
Vium6200g00015 1097 Pfam Leucine rich repeat 601 661 IPR001611 GO:0005515
Vium6200g00015 1097 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Vium6200g00015 1097 Pfam Protein kinase domain 804 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6200g00015 1097 SUPERFAMILY RNI-like 100 408 - -
Vium6200g00015 1097 Gene3D Ribonuclease Inhibitor 410 496 IPR032675 -
Vium6200g00015 1097 SUPERFAMILY L domain-like 442 711 - -
Vium6200g00015 1097 Pfam Leucine rich repeat N-terminal domain 54 92 IPR013210 -
Vium6200g00015 1097 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 408 723 - -
Vium6200g00015 1097 SMART LRR_sd22_2 384 410 - -
Vium6200g00015 1097 SMART LRR_sd22_2 336 362 - -
Vium6200g00015 1097 SMART LRR_sd22_2 288 314 - -
Vium6200g00015 1097 SMART LRR_sd22_2 239 265 - -
Vium6200g00015 1097 SMART LRR_sd22_2 600 629 - -
Vium6200g00015 1097 SMART LRR_sd22_2 648 674 - -
Vium6200g00015 1097 Gene3D Ribonuclease Inhibitor 52 206 IPR032675 -
Vium6200g00015 1097 Gene3D Ribonuclease Inhibitor 595 720 IPR032675 -
Vium6200g00015 1097 Gene3D Ribonuclease Inhibitor 497 594 IPR032675 -
Vium6200g00015 1097 Gene3D Ribonuclease Inhibitor 207 305 IPR032675 -
Vium6200g00015 1097 Gene3D Ribonuclease Inhibitor 306 409 IPR032675 -
Vium6200g00015 1097 PANTHER LEUCINE RICH REPEAT KINASE 2 332 1077 - -
Vium6200g00015 1097 FunFam Leucine-rich repeat receptor protein kinase MSP1 766 881 - -
Vium6200g00015 1097 ProSiteProfiles Leucine-rich repeat profile. 602 623 IPR001611 GO:0005515
Vium6200g00015 1097 FunFam MDIS1-interacting receptor like kinase 2 isoform A 53 208 - -
Vium6200g00015 1097 ProSiteProfiles Protein kinase domain profile. 803 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6200g00015 1097 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 209 304 - -
Vium6200g00015 1097 Gene3D Transferase(Phosphotransferase) domain 1 882 1083 - -
Vium6200g00015 1097 SMART LRR_typ_2 119 143 IPR003591 -
Vium6200g00015 1097 SMART LRR_typ_2 336 360 IPR003591 -
Vium6200g00015 1097 SMART LRR_typ_2 288 312 IPR003591 -
Vium6200g00015 1097 SMART LRR_typ_2 239 263 IPR003591 -
Vium6200g00015 1097 SMART LRR_typ_2 600 623 IPR003591 -
Vium6200g00015 1097 SMART LRR_typ_2 384 407 IPR003591 -
Vium6200g00015 1097 SMART LRR_typ_2 552 576 IPR003591 -
Vium6200g00015 1097 SMART LRR_typ_2 648 671 IPR003591 -
Vium6200g00015 1097 SMART LRR_typ_2 191 215 IPR003591 -
Vium6200g00015 1097 Gene3D Phosphorylase Kinase; domain 1 767 881 - -
Vium6200g00015 1097 FunFam MDIS1-interacting receptor like kinase 2 isoform A 305 404 - -
Vium6200g00015 1097 SUPERFAMILY Protein kinase-like (PK-like) 789 1073 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6200g00015 Vium-Chr6200 98701 102756 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6200g00015 56 975 Receptor kinase-like Gene Family AT4G08850 44.099 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium6200g00015 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6200g00015 - - vra:106759489 2059.65