Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6200g00013 ATGGGAAGCTCCATTTTTCTTCTCCGTCTTACAGTTTCCTCGTTTCTTATTTTCACTTTCTTTCTTGAAGCTGTTCATGGCAGCAAAAAGTGTTACATTGTATACTTGGGAACTCACTCTCATGGTTCCAACCCTACTTCTGTTGACCTCCAAATTGCTACGTATTCTCATTATGATTTACTAGCTTCAATCCTGGGAAGTGAGGAGAAAGCGAAAGAAGCAGTTATTTACTCATACAACAGACACATAAATGGGTTTGCAGCAATGCTGGAAGAGGAAGAAGCAGCAGAGATTGGAAAAAAGCCGAACGTGGTGTCAGTGTTCTTGAGCAATAAACATAAACTGCACACTACCCGCTCATGGGAGTTTCTTGGACTACACATAAATGGTAAGAACTCTGCATGGCAAGAGGGAGGCTTTGGTGAAAATACAATAATTGCAAACATCGACACAGGTGTTTGGCCAGAGTCAGAGAGCTTCGGTGATGAAGGATATGGTCCTGTTCCCTCCAAATGGCGTGGGGGTAATGTTTGTCAAATTAACAAACTTCCACGATCCAAGACAAATCCATGCAACAGAAAGCTGATAGGAGCAAGATTCTTCAACAAAGCTTTTGAGGTCTACAATGGCGAACTTGTTCCCGCAATGCAAACAGCGCGTGACTTCATGGGGCATGGTACCCACACTTTATCAACCGCTGGAGGCAATTTCGTGGGAGGCGCAAGCGTATTTGCGGTGGGTAATGGCACCGCAAAGGGTGGGTCCCCTAGAGCACGAGTTGCCGCGTACAAAGTGTGTTGGTCTCTGACAGACCCAGCCGGTTGTTACGGCGCCGACGTATTGGCTGCTATCGACCAAGCCATCGACGACGGCGTGGATGTCATCAATCTTTCAGCTGGTGGCAGTTACGTGGCGACTCCCGAAGGAATATTCAGCGACGAAGTCTCCATCGGAGCCTTTCATGCTATTTCAAGAAACATACTTTTAGTTGCTTCTGCAGGGAACGATGGACCAACTCCTGGTTCTGTGGTGAATGTGGCTCCTTGGGTCTTCACCATTGCTGCTAGCACCTTAGACAGATCTTTCAGCAGTAATTTAATCATTAACGACAATGAAGTAATCGAGGGAGCGAGTCTTTTTGTAAACTTGCCACCGAATCAGGCTTTTTCTCTAATCCTTTCCACTGATGCTAAACTTCCCAATGCAACATTTCGAGACGCTCAACTGTGTAAGAGCGGAACACTTGATCCTGAAAAAGTAAAGGGCAAAATAGTGCGTTGTATTCGAGGTGGAAAAATAAAATCAGTTGCTGAGGGTAACGAAGCTCTTTCTGCAGGCGCACAGGGAATGATTTTGCGCAATCAAAAGGGAAATGGGAAAACAACTTTTGGCGAGCCTCATGTTCTCTCCACTGTGGGAAGAAATGAGGACCATGCAGGGGGACAACCTGATTTTTACTTAACTGCAACGGAAACTATAAAATCAGGTACTACCATAAGAATGACCCCAGCAAGGACGTTATTTGGAAGAAAGCCAGCTCCAGTTATGGCTTCATTCTCATCTAGAGGACCCAATAAGATTCAGCCATCAATACTCAAGCCTGATGTGACTGCACCTGGTGTGAACATACTTTCTGCTTTCTCAGAATTCGCAAGTGCATCAAACTTGCCAACAGACAATCGTCGTGGGTTTAAATTCAACGTAATGCAAGGTACTTCTATGTCTTGCCCTCATGTTGCTGGCATCGCTGGACTTCTCAAAACACGTCATCCTAGTTGGAGTCCTGCTGCTATAAAATCAGCAATCATGACCACAGCAACCACACTTGACAACACAAACAGGCCAATACAGGATGCGTTTGCTAAAACATTGGCAACTCCTTTTGCTTATGGTTCAGGACAAGTTAAACCTAACCTTGCCATAGATCCTGGCCTTGTTTACGATCTAGGCCTCACTGATTACTTGAACTTCTTATGCGCTTCTGGATACGACCAACAACTCATTTCTTCTCTCAATTTCGAAAGAACTTTCATTTGTTCAGGCACTCACAGTGTGACAGATTTGAACTACCCTTCAATAACATTGCCAAATCTAGGCTTAAAAGCCGTAACCATTACTCGCACGGTAACAAATGTTGGAACACCAAGCACATACGCTGCAACTGCCCAATTACCTGGATATAACATTACCGTTGTGCCAAATTCCTTGACTTTTGATAAAATTGGTGAAAAGAAGACTTTCAAGGTGACTGTGCAGGCAAGCAGTGTAACTAAGCGGAGAACTTATCAATTTGGAGAATTGCGATGGACAGATGGAAAACATATAGTAAGGAGTCCTATTACAGTAAAGCGCAGATGA 2358 0.4444 MGSSIFLLRLTVSSFLIFTFFLEAVHGSKKCYIVYLGTHSHGSNPTSVDLQIATYSHYDLLASILGSEEKAKEAVIYSYNRHINGFAAMLEEEEAAEIGKKPNVVSVFLSNKHKLHTTRSWEFLGLHINGKNSAWQEGGFGENTIIANIDTGVWPESESFGDEGYGPVPSKWRGGNVCQINKLPRSKTNPCNRKLIGARFFNKAFEVYNGELVPAMQTARDFMGHGTHTLSTAGGNFVGGASVFAVGNGTAKGGSPRARVAAYKVCWSLTDPAGCYGADVLAAIDQAIDDGVDVINLSAGGSYVATPEGIFSDEVSIGAFHAISRNILLVASAGNDGPTPGSVVNVAPWVFTIAASTLDRSFSSNLIINDNEVIEGASLFVNLPPNQAFSLILSTDAKLPNATFRDAQLCKSGTLDPEKVKGKIVRCIRGGKIKSVAEGNEALSAGAQGMILRNQKGNGKTTFGEPHVLSTVGRNEDHAGGQPDFYLTATETIKSGTTIRMTPARTLFGRKPAPVMASFSSRGPNKIQPSILKPDVTAPGVNILSAFSEFASASNLPTDNRRGFKFNVMQGTSMSCPHVAGIAGLLKTRHPSWSPAAIKSAIMTTATTLDNTNRPIQDAFAKTLATPFAYGSGQVKPNLAIDPGLVYDLGLTDYLNFLCASGYDQQLISSLNFERTFICSGTHSVTDLNYPSITLPNLGLKAVTITRTVTNVGTPSTYAATAQLPGYNITVVPNSLTFDKIGEKKTFKVTVQASSVTKRRTYQFGELRWTDGKHIVRSPITVKRR 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6200g00013 785 PRINTS Subtilisin serine protease family (S8) signature 221 234 IPR015500 -
Vium6200g00013 785 PRINTS Subtilisin serine protease family (S8) signature 141 160 IPR015500 -
Vium6200g00013 785 PRINTS Subtilisin serine protease family (S8) signature 570 586 IPR015500 -
Vium6200g00013 785 CDD Peptidases_S8_3 113 607 IPR034197 -
Vium6200g00013 785 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 782 IPR045051 -
Vium6200g00013 785 Gene3D Peptidase S8/S53 domain 144 654 IPR036852 GO:0004252|GO:0006508
Vium6200g00013 785 ProSitePatterns Serine proteases, subtilase family, serine active site. 571 581 IPR023828 -
Vium6200g00013 785 ProSiteProfiles Serine proteases, subtilase domain profile. 120 641 - -
Vium6200g00013 785 Gene3D - 658 784 - -
Vium6200g00013 785 Pfam Subtilase family 141 612 IPR000209 GO:0006508|GO:0008236
Vium6200g00013 785 CDD PA_subtilisin_like 365 472 - -
Vium6200g00013 785 Gene3D - 359 508 - -
Vium6200g00013 785 Pfam Fibronectin type-III domain 687 782 IPR041469 -
Vium6200g00013 785 FunFam Subtilisin-like protease SBT5.3 21 116 - -
Vium6200g00013 785 FunFam Subtilisin-like protease SBT1.5 143 368 - -
Vium6200g00013 785 SUPERFAMILY Subtilisin-like 115 645 IPR036852 GO:0004252|GO:0006508
Vium6200g00013 785 Pfam Peptidase inhibitor I9 32 116 IPR010259 -
Vium6200g00013 785 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 116 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6200g00013 Vium-Chr6200 67277 73580 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6200g00013 32 783 Subtilisin-like Serine Gene Family AT2G04160 51.715 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6200g00013 - - gmx:100813564 1269.99