Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6200g00012 ATGGAATGCACGTTTGAAAGGGAAAAGTCCATGCTGGTTCTGTTTCTTTGTGTCTTTCTAACACTCTTGGGGCCTCAAGCTGCTGCTGAAGACAGTGAAGCAAATGCTTTGTTGAAGTGGAAACACAGCTTTGACAACCACAGCCAATCTCTGTTATCAACATGGAGAGGTAATAATCCATGCACATGGAAAGGAATTCAGTGTGACAAATCCAAGTCTGTATCCACCATAGATCTCTCTAGTTATGAACTCAAAGGTACACTCCACACTCTTAGCTTCTCCATTTTGCCTAACCTTCTCAGCCTCAATATCTACCATAACTCCTTTCATGGGACCATTCCCCCACAGATTGGTAACTTAACCAAAGTAAATGTTTTAAATTTTTCTTCAAATTCTTTCCACGGTTCCATTCCTCAAGAAATGTGGACACTGGGGAGTTTACACAGTCTTGATCTTTCCTTGTGTCACCTAAGTGGAGAGCTTCCTAATTCCATGGGAAACTTGTCCAATCTGTCATTTCTAGATTTAGGTGGCAACAATTTTTCTAGCACCATTCCTCCTGGGATTGGAAAGTTGCACAAGTTGCAGTATCTGGGTATGGGAGATTGTAACCTTTTTGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAACCTTGAACTTATTGATTTGTCAAGAAACTCTCTTTCTGGTACCATCCCTGAAACAATAGGTAACATGAGCAGTTTAAATCAACTTTACCTTTCTAATAACTCCCTAATATCTGGGAAAATCCCATCCTCCATGTGGAGCATGTCTAACTTGACCTTGCTCTTCCTTGATGCCAATAATTTTTCTGGATCAATCCCAGCTTCCATAGAAAATCTGGCCAATTTAGAGCAACTTGGACTTGATATCAATCAATTTTCCGGATCCATTCCTTCCACCATTGGAAACTTGACAAAGCTCACCATTCTGTATTTAGGCTTTAATAATCTTTCTGGACCAATTCCTCCCTCTATAGGTAATTTGATCAATTTGGATACCCTTAGTCTCCAATCAAACAAACTCTCTGGACCAATTCCTGATACAGTTGGAAATTTGAAAAAGCTCACCGTTTTGGAATTGTCCAGTAACAAACTTAATGGCAGCATCCCACTAGGCTTGAATGACATTACCAACTGGCAATCCTTGTTACTAGCTGAGAATGATTTCACGGGCCATTTACCTCCTCAAATTTGCTCTGCTGGTTCGCTACAGTTCTTCAATATTTTTGGCAACCGTTTCACGGGTCCAGTGCCAAGAAGCTTAAAGAATTGCTCTAGTATTGCTAGACTCAGGATGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGCGTATATTGATTTGAGTGACAATAAATTTCATGGTCACATTTCACCAAACTGGGGAAAGTGCCACAATCTTTATACCTTCAAGATATCCAACAATAATATTTCCGGGGTTATACCAATAGAACTTGCTGGGGCAAACAAGCTAGGTGTGCTTCATCTTTCTTCTAATCACTTGAGTGGAAAGCTTCCAAAGGAATTAGGGAATTTGAAATCGTTATTTCAACTCAAGATTAGTAATAACCATCTTTCTGGAAACATTCCAACAGAAATTGGATTACTGCAAAATCTTGAAGATTTGGATCTGGGAGATAACGAGTTGAGTGGCCCAATACCAATAGAAGTTGTGAAACTGCACAAGTTACGGAATTTGAATTTGAGCAAAAACAATATTGGTGGAAGCATTCCCTCTCAGTTTAGCCAGTATTTAGTATCTCTTGATCTTAGTTCCAATTTGTTGATTGGAACAATACCAACAAATATTGGAGAGTTGGAAAGGTTGTTCATGTTGAATCTCTCACACAATAGTCTTTCTGGCACCATTCCTTCCACTTTTGGCAGAGCATTGAGTATCGTCAACATATCGGACAATCAATTAGAAGGGCCAATTCCAAATATTCCACCTTTTCTTGATGCTCCAATTGAATCATTGAAAAACAATAAAGGCTTATGTGGTAATGTCAGGGTATTGGATCTTTGTCCAACCAATCATAGTCGAAAGAGCAACAAAGTGATCCTAGTGACATTCCTTAGTTTAGGAGCCCTAGTATTTGTTCTATGTGGGGTGGCACTTTCAATGTACATTTTTTGTCGTGGTAAAAGAAAGGGAAAAAGTCATTCTAATTCTCAAGAAGCGCCAAGGAAGGCAGTCTTTTCCGTATGGAGCTACGATGGAAAAATCATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGCAGGAAGTCAAGGATATGTTTACAAGGTGGTGTTACCTTCGGGTTTGGTTGTTGCTGTGAAGAAACTTCATTCAGCGATAGATGAGGAAATGTCAGAATTCAGTTCAAAGGCTTTTGCAAGTGAGATTAAAGCATTGACAGAAATCAAACATCGGAACATTATAAAGTTGCATGGATTTTGCTCACATTCACAGGTCTCATTCTTGGTCTATCAGTTCATGGAAGGGGGTAGCTTGGATCAGTTGCTGAACAAAGATACAGAAGCAACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGCTTGGCCAATGCTTTATCTTATTTGCATCACGATTGCTCACCTCCAATTGTTCATCGGGACATATCAAGTAAAAATGTTCTTTTGGATCTTAAGTACGAAGCTCATGTTTCTGACTTCGGGACTGCTAAGTTTTTGAAGCCTAGTTCAAGAAGTTGGACTGAATTCGCAGGCACCTTTGGGTATGCTGCTCCAGAGTTGGCCCAGACAATGGAAGTGAATGAGAAATGTGATGTTTACAGCTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAGCATCCAAGAGATCTCATTTCTCAGTTTGTGTCACCATCTATGCAACCAATTGTTAAGGATTTGCTATTGGTTGATGTTTTAGATCAACGGCCTCCTCAACCTACAAAACCAATTGATGGGGAGGTGATCTTAATCGTAAGGTTAGCACTTGCTTGCTTGAGTCAAAATCCACGTTCTCGCCCAACCATGGAACAAGTATCCAAGGCATTTGGAACAGGAAAATCACCTTCGGCTGACCTATTTCCTAGGATCAGTTTGGGACAACTCTGCTGA 3192 0.3972 MECTFEREKSMLVLFLCVFLTLLGPQAAAEDSEANALLKWKHSFDNHSQSLLSTWRGNNPCTWKGIQCDKSKSVSTIDLSSYELKGTLHTLSFSILPNLLSLNIYHNSFHGTIPPQIGNLTKVNVLNFSSNSFHGSIPQEMWTLGSLHSLDLSLCHLSGELPNSMGNLSNLSFLDLGGNNFSSTIPPGIGKLHKLQYLGMGDCNLFGSIPQEIGMLTNLELIDLSRNSLSGTIPETIGNMSSLNQLYLSNNSLISGKIPSSMWSMSNLTLLFLDANNFSGSIPASIENLANLEQLGLDINQFSGSIPSTIGNLTKLTILYLGFNNLSGPIPPSIGNLINLDTLSLQSNKLSGPIPDTVGNLKKLTVLELSSNKLNGSIPLGLNDITNWQSLLLAENDFTGHLPPQICSAGSLQFFNIFGNRFTGPVPRSLKNCSSIARLRMEGNQLEGDIAQDFGVYPNLAYIDLSDNKFHGHISPNWGKCHNLYTFKISNNNISGVIPIELAGANKLGVLHLSSNHLSGKLPKELGNLKSLFQLKISNNHLSGNIPTEIGLLQNLEDLDLGDNELSGPIPIEVVKLHKLRNLNLSKNNIGGSIPSQFSQYLVSLDLSSNLLIGTIPTNIGELERLFMLNLSHNSLSGTIPSTFGRALSIVNISDNQLEGPIPNIPPFLDAPIESLKNNKGLCGNVRVLDLCPTNHSRKSNKVILVTFLSLGALVFVLCGVALSMYIFCRGKRKGKSHSNSQEAPRKAVFSVWSYDGKIMFENIIEATENFDDKYLIGAGSQGYVYKVVLPSGLVVAVKKLHSAIDEEMSEFSSKAFASEIKALTEIKHRNIIKLHGFCSHSQVSFLVYQFMEGGSLDQLLNKDTEATAFDWEKRVNVVKGLANALSYLHHDCSPPIVHRDISSKNVLLDLKYEAHVSDFGTAKFLKPSSRSWTEFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPRDLISQFVSPSMQPIVKDLLLVDVLDQRPPQPTKPIDGEVILIVRLALACLSQNPRSRPTMEQVSKAFGTGKSPSADLFPRISLGQLC 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6200g00012 1063 PANTHER LEUCINE RICH REPEAT KINASE 2 309 1047 - -
Vium6200g00012 1063 SUPERFAMILY Protein kinase-like (PK-like) 756 1041 IPR011009 -
Vium6200g00012 1063 SMART LRR_typ_2 361 385 IPR003591 -
Vium6200g00012 1063 SMART LRR_typ_2 168 192 IPR003591 -
Vium6200g00012 1063 SMART LRR_typ_2 313 337 IPR003591 -
Vium6200g00012 1063 SMART LRR_typ_2 623 647 IPR003591 -
Vium6200g00012 1063 SMART LRR_typ_2 96 120 IPR003591 -
Vium6200g00012 1063 SMART LRR_typ_2 577 600 IPR003591 -
Vium6200g00012 1063 SMART LRR_typ_2 216 240 IPR003591 -
Vium6200g00012 1063 SMART LRR_typ_2 265 289 IPR003591 -
Vium6200g00012 1063 SMART LRR_typ_2 529 553 IPR003591 -
Vium6200g00012 1063 FunFam MDIS1-interacting receptor like kinase 2 isoform A 186 282 - -
Vium6200g00012 1063 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Vium6200g00012 1063 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Vium6200g00012 1063 FunFam MDIS1-interacting receptor like kinase 2 isoform A 283 382 - -
Vium6200g00012 1063 SUPERFAMILY RNI-like 77 384 - -
Vium6200g00012 1063 Pfam Leucine Rich Repeat 315 337 IPR001611 GO:0005515
Vium6200g00012 1063 Gene3D Transferase(Phosphotransferase) domain 1 852 1050 - -
Vium6200g00012 1063 FunFam Leucine-rich repeat receptor protein kinase MSP1 733 851 - -
Vium6200g00012 1063 ProSitePatterns Tyrosine protein kinases specific active-site signature. 897 909 IPR008266 GO:0004672|GO:0006468
Vium6200g00012 1063 SMART LRR_sd22_2 313 342 - -
Vium6200g00012 1063 SMART LRR_sd22_2 361 384 - -
Vium6200g00012 1063 SMART LRR_sd22_2 216 242 - -
Vium6200g00012 1063 SMART LRR_sd22_2 265 291 - -
Vium6200g00012 1063 SMART LRR_sd22_2 553 585 - -
Vium6200g00012 1063 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 385 696 - -
Vium6200g00012 1063 Gene3D Ribonuclease Inhibitor 384 694 IPR032675 -
Vium6200g00012 1063 Gene3D Phosphorylase Kinase; domain 1 732 851 - -
Vium6200g00012 1063 FunFam MDIS1-interacting receptor like kinase 2 852 1049 - -
Vium6200g00012 1063 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vium6200g00012 1063 ProSiteProfiles Protein kinase domain profile. 771 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6200g00012 1063 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Vium6200g00012 1063 Pfam Protein kinase domain 773 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6200g00012 1063 SUPERFAMILY RNI-like 352 695 - -
Vium6200g00012 1063 Gene3D Ribonuclease Inhibitor 284 383 IPR032675 -
Vium6200g00012 1063 Gene3D Ribonuclease Inhibitor 185 283 IPR032675 -
Vium6200g00012 1063 FunFam MDIS1-interacting receptor like kinase 2 isoform A 30 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6200g00012 Vium-Chr6200 63314 67120 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6200g00012 1 945 Receptor kinase-like Gene Family AT4G08850 43.139 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium6200g00012 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6200g00012 - - gmx:100815688 1428.31