Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6200g00002 ATGGAAGGAGAGAGAGCTGCTGCTACCAATTATGACCTTCAAGTTTCCTTCTCCAACACCCCACAACCCATACACGAATTGGGTTTTGTTCACTATGAAGAAAACCAGCTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCCTTAAACTCCGATGTAGTTGTTTCTTCTGCCACTACAACTGCTGCAACCATCGGATTCATGAATCACACTCAACTTCTCACCAAAACTTGGAATAACAACGACCAGGTCGAAACTCTGGATCCAAAGGCTGTCGATGAAGAAAACTGCACTGGAAACGCTAGTGAAGGAAACAACAACTCTTGGTGGAGGAGCGCAGCTTCGGAGAAGAACAAGGTGAAAATAAGGAGGAAGCTAAGAGAACCAAGGTTTTGTTTTCAAACAAGAAGCGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAAAATAGCCTTCATCCGAGAAGTTATTACCGTTGCACCCACAACAACTGCAGGGTGAAGAAAAGAGTTGAACGACTCTCAGAGGATTGTCGTATGGTGATAACCACTTACGAAGGAAGACACAATCACTCTCCTTGCGAGGACTCAAATTCATCGGAGCATGAATGCTTTACCTCTTTCTAG 654 0.4388 MEGERAAATNYDLQVSFSNTPQPIHELGFVHYEENQLLGFLSPSSQSQSLNSDVVVSSATTTAATIGFMNHTQLLTKTWNNNDQVETLDPKAVDEENCTGNASEGNNNSWWRSAASEKNKVKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCEDSNSSEHECFTSF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6200g00002 217 FunFam WRKY transcription factor 57 129 203 - -
Vium6200g00002 217 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6200g00002 217 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 207 IPR044810 GO:0003700
Vium6200g00002 217 SMART WRKY_cls 143 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6200g00002 217 Gene3D WRKY domain 129 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6200g00002 217 SUPERFAMILY WRKY DNA-binding domain 135 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6200g00002 217 ProSiteProfiles WRKY domain profile. 138 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6200g00002 Vium-Chr6200 21178 27640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6200g00002 3 217 WRKY Transcription Factor Family AT2G44745 57.709 2.21e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium6200g00002 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6200g00002 - - gmx:100170677 356.681