Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6200g00001 ATGGAAGGAGAGAGAGCTGCTGCTACCAATTATGACCTTCAAGTTTCCTTCTCCAACACCCCACAACCCATACACGAATTGGGTTTTGTTCACTATGAAGAAAACCAGCTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCCTTAAACTCCGATGTAGTTGTTTCTTCTGCCACTACAACTGCTGCAACCATCGGATTCATGAATCACACTCAACTTCTCACCAAAACTTGGAATAACAACGACCAGGTCGAAACTCTGGATCCAAAGGCTGTCGATGAAGAAAACTGCACTGGAAACGCTAGTGAAGGAAACAACAACTCTTGGTGGAGGAGCGCAGCTTCGGAGAAGAACAAGGTGAAAATAAGGAGGAAGCTAAGAGAACCAAGGTTTTGTTTTCAAACAAGAAGCGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAAAATAGCCTTCATCCGAGGTAA 495 0.4364 MEGERAAATNYDLQVSFSNTPQPIHELGFVHYEENQLLGFLSPSSQSQSLNSDVVVSSATTTAATIGFMNHTQLLTKTWNNNDQVETLDPKAVDEENCTGNASEGNNNSWWRSAASEKNKVKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6200g00001 164 Pfam WRKY DNA -binding domain 144 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6200g00001 164 SUPERFAMILY WRKY DNA-binding domain 135 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6200g00001 164 Gene3D WRKY domain 130 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6200g00001 164 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 56 164 IPR044810 GO:0003700
Vium6200g00001 164 ProSiteProfiles WRKY domain profile. 138 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6200g00001 Vium-Chr6200 7037 8262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6200g00001 3 164 WRKY Transcription Factor Family AT2G44745 50.000 8.42e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium6200g00001 WRKY 1.6e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6200g00001 - - pvu:PHAVU_008G0481000 258.07