Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium61g00006 ATGGGAGGAAGTAGTGCAAAGGTTGTCTTCACCCTGTTGGTCACTCTGGCCATCACCATCCCATGCCTTGAGGCTGGCATTGCTAAATACGACGACTTTCTCAAAGCTCAAGCTGAAGAAGCCCACGAAATCGCTCTCCAGTCCTATGTGCCAACTCCTGAATTGGTCACCGGTGAGCTCAATTACCACGTTCATCGTGCCTTGAAAAACAGAACAAGGAGGGGACTGAATGAGGCCAAGAACCCTGTTGGAGGGCGCTGTGACAGCAGCAACCCCATTGACAATTGCTGGAGGTGCAACAAAGACTGGGCCAACGACAGGTATCGGTTGGCCAGATGCGGAAAAGGGTTCGGAAGACGCGCAGTGGGTGGGCTCGGTGGACCCATTTACGTTGTCACCGATAACTCCGACGAGGACATGGTCAACCCTAAGCCAGGAACCCTTCGATATGCCGTCACCCAAAAGGGTCCACTTTGGATCATCTTCCAACGCAGCATGATCATCACTCTGAAGCAGGAGCTTCTCATTTCCTCCGACAAGACCATCGACGGTCGTGGTGCCAACGTTCAGATCAAGGACGGTGGTGGCCTCACCATACAGTTCGCGAACAACGTCATCATCCACGGAATTCGCGTTAAGAACATTGTGCCTAAGGAGGGTGGCATGATCAGGGACTCCTACAACCACGTTGGACTGAGAACGAGGAGTGATGGTGATGCCATCTCCCTATTCGGAGCCTCCAACGTGTGGATCGATCATGTTTCTCTCTCTAACGCTGCCGATGGACTGATCGATGTGATCCAAGGCTCCACAGCCATCACCATCTCCAACTGCCACATGACCAGACACAACGATGTGATGTTGTTCGGTGCGACTGACACGTACACGGAGGACAAGATCATGCAGATAACAGTGGCATTCAACCATTTCGGGCAGGGACTGATCCAGAGGATGCCAAGGTGCAGATGGGGATTCTTCCACGTTCTTAACAACGATTACACTCACTGGATGATGTACGCCATTGGTGGAAGCGCAGGGCCTACTATTCTTAGCCAAGGAAACCGTTTCATTGCTCCCAACAACGACGCTGCAAAGGAGGTCACACACAGAAATGCTACACCAGACGTCTGGAAGAACTGGCAGTGGCAATCCGACATGGACCTTCTCATGAACGGTGCCACTTTCAACACTTCCGGTGCTCCCATCAAGATTACACACAAGAAGGGTCTCATCATGAAGCCAAGAGATGGCACTCATGTCAGCAGACTCACACGCCATGCTGGCGCTCTCAACTGCTTTGTTGGTTGCCTTGCTAGGAATATATATTTATATCTATACATCAATAGATATACAACATGTGTATGTATATACGTACGTGTGTGTGTTCAGTTTTTCTTTGTTATGCTTACTGAGACATCACATAAGATGTATGGTTTGTGCGCTTTTAGATGGAGGATGAGTAGACTTGAGTCTTATGCAACAGGCATTGTTGTTTGA 1497 0.499 MGGSSAKVVFTLLVTLAITIPCLEAGIAKYDDFLKAQAEEAHEIALQSYVPTPELVTGELNYHVHRALKNRTRRGLNEAKNPVGGRCDSSNPIDNCWRCNKDWANDRYRLARCGKGFGRRAVGGLGGPIYVVTDNSDEDMVNPKPGTLRYAVTQKGPLWIIFQRSMIITLKQELLISSDKTIDGRGANVQIKDGGGLTIQFANNVIIHGIRVKNIVPKEGGMIRDSYNHVGLRTRSDGDAISLFGASNVWIDHVSLSNAADGLIDVIQGSTAITISNCHMTRHNDVMLFGATDTYTEDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWMMYAIGGSAGPTILSQGNRFIAPNNDAAKEVTHRNATPDVWKNWQWQSDMDLLMNGATFNTSGAPIKITHKKGLIMKPRDGTHVSRLTRHAGALNCFVGCLARNIYLYLYINRYTTCVCIYVRVCVQFFFVMLTETSHKMYGLCAFRWRMSRLESYATGIVV 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium61g00006 498 SUPERFAMILY Pectin lyase-like 91 429 IPR011050 -
Vium61g00006 498 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Vium61g00006 498 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Vium61g00006 498 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Vium61g00006 498 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Vium61g00006 498 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Vium61g00006 498 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Vium61g00006 498 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Vium61g00006 498 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Vium61g00006 498 SMART amb_all 165 362 IPR002022 -
Vium61g00006 498 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
Vium61g00006 498 Pfam Pectate lyase 172 356 IPR002022 -
Vium61g00006 498 Gene3D - 90 431 IPR012334 -
Vium61g00006 498 PANTHER PECTATE LYASE 18-RELATED 43 434 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium61g00006 Vium-Chr61 56345 58115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium61g00006 9 435 Polysaccharide Lyase AT1G14420 56.404 3.48e-176 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium61g00006 K01728 - gmx:100810615 737.258