Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium61g00003 ATGGGGTTTGGGAGCAATGCAGTTCAAGCAGGGAGTTTGGATGTGGACAAGTCAAAGGGCAGGAAGAACAAGGAAGGTGGTGTGAAGGAGAGAAAATGGGGGTTTAGATTTAGCATCTTTGGGAGTTGCATACCTTCAAAATCAAAAGTTGATAGCACAAAAGTTAGTGGCACTAGTGCCCCTAATAATGGTGAAAATGTCAAGTCAGCGGTAACTGAATCAGAGGAAAACAAATCTGCATCTGATAGAATCACAAAGGAAACGGTTGCTCCTCCGGAGTCCTCTACCACAACAAGTGATGCAGAAAGTAACCCTTCCACTCCAATATTCAGTGAGGAGTTGAAGGTTGCTTCTTGCCTGAGAAAATTCACATTCAACGGACTTAAGGTGGCCACAAGGAATTTTAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAAGAGAATGGAACTGCACCTGTGAAACCAGGTACCGGGCTTACGGTTGCGGTCAAGACCCTCAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAGTTAAATTATCTTGGTGATCTTGTCCATCCAAATCTTGTTAAACTGGTTGGTTTCTGCATTGAAGATGACCAAAGATTACTGGTTTATGAGTTTATGCCCAGAGGCAGTTTGGAAAACCACCTCTTTAGAAGACCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAGGGTCTTGCTTTTCTCCACCAAGAGGCTCAAAGACCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTTGCCAAAGATGGTCCTGAAGGCGAAAAGACACATGTGTCAACAAGAGTTATGGGAACTTATGGTTATGCAGCCCCCGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTACAGCTTTGGAGTAGTACTACTTGAAATGCTCACCGGCCGGCGATCAATTGACAAGAAGAGACCAAACGGGGAACACAATCTGGTGGAGTGGGCAAGACCTGTTCTTGGAGACCGGAGGATGTTCTACCGGATAATCGACCCCCGCCTGGAAGGCCACTTCTCGGTTAAAGGGGTACAGAAAGCTGTGCAGCTTGCTGCTCAATGCCTTAGCCGTGATCCAAAATCCAGACCCTTGATGAGTGAAGTTGTTCAAGCTTTGAAGCCTTTACCAAGCCTCAAGGACATGGCTATCTCATCTTATCACTTCCAGATTGCGCGAGTCGACCGAACCATGTCGATGCCGAATCATAAAAATGGCATCAGAACACAGATAGTATCTGTGTCAAGGAAGGGTCAACCTGTAAGGACATTGTCTAGTTCAAATGTTCCACATGGTTCTCCATACATTCGATATACCAAGTCTCCAAAACCTACTGGGTAA 1467 0.4499 MGFGSNAVQAGSLDVDKSKGRKNKEGGVKERKWGFRFSIFGSCIPSKSKVDSTKVSGTSAPNNGENVKSAVTESEENKSASDRITKETVAPPESSTTTSDAESNPSTPIFSEELKVASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGHQGHKEWLAELNYLGDLVHPNLVKLVGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHQEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGVQKAVQLAAQCLSRDPKSRPLMSEVVQALKPLPSLKDMAISSYHFQIARVDRTMSMPNHKNGIRTQIVSVSRKGQPVRTLSSSNVPHGSPYIRYTKSPKPTG 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium61g00003 488 MobiDBLite consensus disorder prediction 43 107 - -
Vium61g00003 488 Pfam Protein tyrosine and serine/threonine kinase 139 415 IPR001245 GO:0004672|GO:0006468
Vium61g00003 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vium61g00003 488 MobiDBLite consensus disorder prediction 45 70 - -
Vium61g00003 488 MobiDBLite consensus disorder prediction 88 107 - -
Vium61g00003 488 CDD STKc_IRAK 141 418 - -
Vium61g00003 488 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium61g00003 488 MobiDBLite consensus disorder prediction 456 488 - -
Vium61g00003 488 Gene3D Transferase(Phosphotransferase) domain 1 221 435 - -
Vium61g00003 488 Gene3D Phosphorylase Kinase; domain 1 119 220 - -
Vium61g00003 488 MobiDBLite consensus disorder prediction 456 476 - -
Vium61g00003 488 SUPERFAMILY Protein kinase-like (PK-like) 117 415 IPR011009 -
Vium61g00003 488 PANTHER OS01G0588500 PROTEIN-RELATED 87 418 - -
Vium61g00003 488 MobiDBLite consensus disorder prediction 1 27 - -
Vium61g00003 488 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524
Vium61g00003 488 FunFam Probable serine/threonine-protein kinase PBL8 221 434 - -
Vium61g00003 488 FunFam Serine/threonine-protein kinase BIK1 102 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium61g00003 Vium-Chr61 14347 18485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium61g00003 42 431 Glycoside Hydrolase AT3G07070 49.109 2.95e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium61g00003 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium61g00003 - - gmx:100499647 882.478