Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium619g00007 ATGGCGAATAATAGAGAACAGGGTAACGAGGGTGACCGGAGTTACTTGGGTAAAGCGAGAAACTATCATTCGTTGTCAATGCCGATGATGTTTTCGGGATTGGATAGGGAGAGGGAGATGTCAGCCATGATCTCTGCTTTGACTCAAGTTGTCACCGGAGAGGAACATGATCACGATCACTCGCTTCTTCATCAAAACAATGATAAAAGTGGTGGTGGTGATGGTTTTACTATAACATCAAACATGGATTCTGGTTCCATCGCACCATCTTCTGCATGTTCATCTTATTGTGGAAACTCTGTTCCAAAGAGAAGGAGGGAAGGTGACGATACAAGTGATCTCCCACGTGGAACTTCTTTCCCTGCTATTTCAACATATGGAGTTGGCGAAAGTTCAAGCAGGATGAGGAAGGAAAGGAGAGAAATGGAGAATAAGGTATACGATTACGAGTACAGGGCAGAGAAGGTGGGAATGGAAGAGGAACCAAAAAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCGGAAATAAGGGACCCATTCAAGGCTACCAGAGTGTGGTTAGGAACATTCGAGACCGCTGAAGATGCAGCCAGAGCCTACGATGAAGCTTCCTTACGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCCGAAAATGTCAGGCTCAGACACCGATCACCGGAACCACCACCAGCCGCACCCCTTTTCTCCATTCCGTCTACAACTGAACCCATTGTTCACACTCAACCTCAGGGTTCACATGATTCCGGCAACTTTTATGAATATTGTTATTCGCATGTACATGAGTTTCCCGTGAGCCTCTATGATCAGGTTGCCGTCTCATCATCATTCTCTGTGGCGGCTTCTCATCTTCAATCTTCACCTTCATATTCTTCTTCCTCAACTATCTCTTCTTCCCAACCGTCTCTACTTTCCCCTCATGCTACGCATCTATCCCCATGGTCTTCTGCGCCTGATTACACTAAGACCTCCCATCCTTCCTCCTCCTAG 1026 0.4698 MANNREQGNEGDRSYLGKARNYHSLSMPMMFSGLDREREMSAMISALTQVVTGEEHDHDHSLLHQNNDKSGGGDGFTITSNMDSGSIAPSSACSSYCGNSVPKRRREGDDTSDLPRGTSFPAISTYGVGESSSRMRKERREMENKVYDYEYRAEKVGMEEEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDEASLRFRGNKAKLNFPENVRLRHRSPEPPPAAPLFSIPSTTEPIVHTQPQGSHDSGNFYEYCYSHVHEFPVSLYDQVAVSSSFSVAASHLQSSPSYSSSSTISSSQPSLLSPHATHLSPWSSAPDYTKTSHPSSS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium619g00007 341 FunFam Ethylene-responsive transcription factor 2 164 223 - -
Vium619g00007 341 MobiDBLite consensus disorder prediction 52 139 - -
Vium619g00007 341 Gene3D AP2/ERF domain 164 224 IPR036955 GO:0003700|GO:0006355
Vium619g00007 341 PANTHER DNA-BINDING DOMAIN 134 300 IPR044808 GO:0003700|GO:0009873
Vium619g00007 341 CDD AP2 165 224 IPR001471 GO:0003700|GO:0006355
Vium619g00007 341 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
Vium619g00007 341 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
Vium619g00007 341 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Vium619g00007 341 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700|GO:0006355
Vium619g00007 341 Pfam AP2 domain 165 214 IPR001471 GO:0003700|GO:0006355
Vium619g00007 341 MobiDBLite consensus disorder prediction 66 98 - -
Vium619g00007 341 MobiDBLite consensus disorder prediction 300 341 - -
Vium619g00007 341 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium619g00007 Vium-Chr619 77200 78855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium619g00007 163 227 AP2-EREBP Transcription Factor Family AT5G61890 81.538 2.36e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium619g00007 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium619g00007 - - var:108344045 627.476