Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium619g00005 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACGTGGATTCTTCCAAGAAGAAGAAGGAGGTCACCGACAAGATCGAGAGAAGTTACCGGAAGCGCGACGTCGACGACGATCCCCACGCCGACGACAGAAGGAGCAAGAGAAGGGGCGACGACGACAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGGGATAGGGACAGAGAACGGGAACGTGACCGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGGGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGACAAGGACAAGGATAGGGATAGGAGAGATCGTGATAAGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAAGGAACGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGGTTTAGGGATAAGAAAGATGCTGTGGAACCTGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCATTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTCGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCAGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGCCACTGCAAGGGTTTTGGTTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGTCAAGATACCACCGCAAAATCGGCAGACTTAGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCCAGAGCATTGCTGATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTGTTAGCTTACCTATTGGTGCATCAGTTCTTCCAGCACAAGTTATGCCTACCCCAATGGTAGAACCTGTAGGAAGCCCAAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACTGAGTCGGAACCAGATTTTGATATATACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCTGGTGAAGCATATTTTTGTTTACAAAAAAAGTGCAGGTTTTGTCTATTTGCAATTTGAAACAGTGGAAGCAGCGATTGCTGCTCAACGTGCAATGCACATGAGTTGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGCAACCACAATTATACGAAGCCAAGTTTAAAGGGGAGTGA 1647 0.4675 MDFDEYEYLEKTVEEDVDSSKKKKEVTDKIERSYRKRDVDDDPHADDRRSKRRGDDDNGGSKKDRDRDRDRDRERERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDKDRDRRDRDKDKEKERERRERDKEREERERSRRSRSRSERDRDRERDFEMRDGRRFRDKKDAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQQAVSLPIGASVLPAQVMPTPMVEPVGSPSECLLLKNMFDPTTESEPDFDIYIKEDVEEECSKYGLVKHIFVYKKSAGFVYLQFETVEAAIAAQRAMHMSWFARRLISAIFMQPQLYEAKFKGE 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium619g00005 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Vium619g00005 548 CDD RRM1_RBM39_like 190 262 - -
Vium619g00005 548 FunFam Splicing factor CC1-like 115 273 - -
Vium619g00005 548 NCBIfam splicing factor, CC1-like family 75 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium619g00005 548 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 384 473 IPR029123 -
Vium619g00005 548 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium619g00005 548 Coils Coil 124 149 - -
Vium619g00005 548 Gene3D - 115 275 IPR012677 -
Vium619g00005 548 MobiDBLite consensus disorder prediction 13 161 - -
Vium619g00005 548 Gene3D - 287 383 IPR012677 -
Vium619g00005 548 CDD RRM3_RBM39_like 454 536 - -
Vium619g00005 548 Gene3D - 451 548 IPR012677 -
Vium619g00005 548 MobiDBLite consensus disorder prediction 1 161 - -
Vium619g00005 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 258 IPR000504 GO:0003723
Vium619g00005 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 363 IPR000504 GO:0003723
Vium619g00005 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 530 IPR000504 GO:0003723
Vium619g00005 548 SUPERFAMILY RNA-binding domain, RBD 291 537 IPR035979 GO:0003676
Vium619g00005 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Vium619g00005 548 SMART rrm1_1 190 262 IPR000504 GO:0003723
Vium619g00005 548 SMART rrm1_1 292 365 IPR000504 GO:0003723
Vium619g00005 548 SMART rrm1_1 456 533 IPR000504 GO:0003723
Vium619g00005 548 SUPERFAMILY RNA-binding domain, RBD 182 277 IPR035979 GO:0003676
Vium619g00005 548 FunFam Splicing factor CC1-like 274 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium619g00005 Vium-Chr619 51592 59443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium619g00005 263 364 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.23e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium619g00005 K13091 - gmx:100793461 697.582