Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium619g00004 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACGTGGATTCTTCCAAGAAGAAGAAGGAGGTCACCGACAAGATCGAGAGAAGTTACCGGAAGCGCGACGTCGACGACGATCCCCACGCCGACGACAGAAGGAGCAAGAGAAGGGGCGACGACGACAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGGGATAGGGACAGAGAACGGGAACGTGACCGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGGGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGACAAGGACAAGGATAGGGATAGGAGAGATCGTGATAAGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAAGGAACGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGGTTTAGGGATAAGAAAGATGCTGTGGAACCTGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCATTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTCGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCAGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGCCACTGCAAGGGTTTTGGTTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGTCAAGATACCACCGCAAAATCGGCAGACTTAGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCCAGAGCATTGCTGATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGGTTTGTTGTTAATACTAGTATTCCTCACATTTTTCTACTTTGCAGCATGGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTGTTAGCTTACCTATTGGTGCATCAGTTCTTCCAGCACAAGTTATGCCTACCCCAATGGTAGAACCTGTAGGAAGCCCAAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACTGAGTCGGAACCAGATTTTGATATATACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCTGGTGAAGCATATTTTTGTTTACAAAAAAAGTGCAGGTTTTGTCTATTTGCAATTTGAAACAGTGGAAGCAGCGATTGCTGCTCAACGTGCAATGCACATGAGTTGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGCAACCACAATTATACGAAGCCAAGTTTAAAGGGGAGTGA 1692 0.4634 MDFDEYEYLEKTVEEDVDSSKKKKEVTDKIERSYRKRDVDDDPHADDRRSKRRGDDDNGGSKKDRDRDRDRDRERERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDKDRDRRDRDKDKEKERERRERDKEREERERSRRSRSRSERDRDRERDFEMRDGRRFRDKKDAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISARFVVNTSIPHIFLLCSMGMPVVNGSVPAQQAVSLPIGASVLPAQVMPTPMVEPVGSPSECLLLKNMFDPTTESEPDFDIYIKEDVEEECSKYGLVKHIFVYKKSAGFVYLQFETVEAAIAAQRAMHMSWFARRLISAIFMQPQLYEAKFKGE 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium619g00004 563 SUPERFAMILY RNA-binding domain, RBD 291 552 IPR035979 GO:0003676
Vium619g00004 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Vium619g00004 563 CDD RRM1_RBM39_like 190 262 - -
Vium619g00004 563 Gene3D - 287 383 IPR012677 -
Vium619g00004 563 Coils Coil 124 149 - -
Vium619g00004 563 SUPERFAMILY RNA-binding domain, RBD 182 276 IPR035979 GO:0003676
Vium619g00004 563 MobiDBLite consensus disorder prediction 13 161 - -
Vium619g00004 563 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 384 488 IPR029123 -
Vium619g00004 563 Gene3D - 117 276 IPR012677 -
Vium619g00004 563 FunFam Splicing factor CC1-like 274 380 - -
Vium619g00004 563 SMART rrm1_1 190 262 IPR000504 GO:0003723
Vium619g00004 563 SMART rrm1_1 471 548 IPR000504 GO:0003723
Vium619g00004 563 SMART rrm1_1 292 365 IPR000504 GO:0003723
Vium619g00004 563 MobiDBLite consensus disorder prediction 1 161 - -
Vium619g00004 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 363 IPR000504 GO:0003723
Vium619g00004 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 493 545 IPR000504 GO:0003723
Vium619g00004 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 258 IPR000504 GO:0003723
Vium619g00004 563 NCBIfam splicing factor, CC1-like family 75 560 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium619g00004 563 FunFam Splicing factor CC1-like 114 273 - -
Vium619g00004 563 Gene3D - 466 563 IPR012677 -
Vium619g00004 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Vium619g00004 563 CDD RRM3_RBM39_like 469 551 - -
Vium619g00004 563 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 560 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium619g00004 Vium-Chr619 51592 59445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium619g00004 263 364 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.90e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium619g00004 K13091 - gmx:100793461 689.878