Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6198g00037 ATGTATTGCAACTTATTAAACTATCTTATCTCTGTTGAAAGAATCAAGCAATTCGTTCACCTACCGTCAGAGCCTCCTGCTATTGTGAAGGACCACCAACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCGAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACTGGAAGTGGAAAGAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGACATTCTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTTTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTATTCAGATGATGAGATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTCAGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGGCAACTGTTTTGTCTTGGAAGAGTACTGCTAAAGAGGAACAGAATTCTTGTTCTGGATGAAGCCACTGCCTCCATTGACTCTGCCACAGATTCAATTCTACAAAGAATTATCAGACAAGAGTTTGAAGCATGCACAGTTATTACAGTGGCTCACAGGGTTCCCACTGTTATAGACAGTGATATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTCGAGACTAATGGATACCAACTCTTCATTCTCGAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTAA 867 0.4337 MYCNLLNYLISVERIKQFVHLPSEPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSQVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDSILQRIIRQEFEACTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTNSSFSKLVAEYWASCSKNSS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6198g00037 288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 277 IPR027417 -
Vium6198g00037 288 Gene3D - 27 278 IPR027417 -
Vium6198g00037 288 Pfam ABC transporter 61 209 IPR003439 GO:0005524
Vium6198g00037 288 CDD ABCC_MRP_domain2 42 262 - -
Vium6198g00037 288 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 280 - -
Vium6198g00037 288 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 278 IPR003439 GO:0005524
Vium6198g00037 288 FunFam ABC transporter C family member 3 27 278 - -
Vium6198g00037 288 SMART AAA_5 70 255 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6198g00037 Vium-Chr6198 175115 177003 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6198g00037 31 276 Calmodulin-binding Proteins AT2G36910 31.801 5.66e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6198g00037 - - vum:124842621 558.14