Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6198g00034 ATGTTTTTCATGTGTGTCTTTTGTGTATCATTGCTCTCCAATCTGATCAAGAAAAGACCTGCAAATGCAAGTGGTGGTTTCAGAAAGAGATTGGTTCCTGTAGTTACTTCATTCTGTTGTACTCTTTTAAGCGTTGCATATTTTGTTGATGGTTTGTGGAATCTCATAACCAAAACCACAGGCTTCAATCAGCTGAACTTGTTGGTTTGCATTGTGAGAGGACTGGTTTGGATATCTATAGCAGCTTCACTGTTTGTTCAAAGATTTCAATGGATGAAAAATCTATGCTCTATTTGGTGGGTGTTTTCATGCACATTGGTTTCAGTACTCAATGCTGAAATTCTGCTGAAAGGGCGTAGCTTTCAAATGTTTGATATGGCAATATGGGCAGTGCATATCCTAACTGTTCTCTGTGTCTTCCAAAATCATGGCTACTTTGTCCCACAAGAAATCCCTGATGCCAGTTTATGTGAGCCTCTGTTAGTTCCTAAGGAAATACATAAACAAACAGGACTTGGCCATGCCTCCTTTTTCAGCAGATTCACTTTCTCTTGGATGAATGCTTTGCTCAGTTTGGGTTACTCAAAGCCACTAGCACGTGATGACATCCCTTCTCTTAATTCTGAAGATAAAGCTGATTTTGCATACCAAAAGTTTGCACATGCATGGCTTTCCCTTTTGAGAAGCAGTGACAATTCCAAGAACTTGGTCATGTGGTCCGTAGCCCGAGTTTACATGAAAGAAAATATCTCCATAGCCATTTGCGCATTTCTGAGGACAATTTGTGCTGTTGTTTCTCCTTTACTTGTTAATGTTTTTGTAAACTATTCCAGTTCCACTGAGGAAGACTTAAAACAAGGAATGGCCATAATGGGGTGTCTTATATTTGCCAAGGTGGTTGAGTCTGTGTCTCAAAGACATTGGTCTTTTAACTCAAGGAGGTTAGGAATGAAAATGAGATCTTCTTTAATGGCTGCAGTGTATCAAAAGCAATTAAAACTCTCAGTTTTGGGTAGGAGAAGACATTCAACTGGTGAGATTGTTAATTACATTGCAGTTGATGCATATCGAATGGGTGAATTTCCATGGTGGTTTCATACTTTGTTGTTTTCTGCACTGCAAGTTTTTCTGGCTCTTGGTGTCCTTTTTGGTGTTGTGGGTATAGGTGCACTTCCTGGTTTAGTGCCACTTCTCATTTGTGGATTTCTCAACGTACCGTTTGCAAAGATCCTTCAAAAATATAGGTCGGAGTTTATGATTGCACAAGATGAGCGTCTGAGGTCAACTTCAGAGATTCTTAGTAGTATGAAAATCATAAAGCTACAGTCCTGGGAGTATAACTTCAAGAAGTTAGTTGAATCCCTTCGTGCTAAAGAGTTAAAATGTTTGGCTGAAGTACACTTCATGAGAGCTTGTGGAACATTTATATATTGGCTCTCTCCGACCATCGTTTCTTCAGTTATCTTAATGGGATGTGCGCTTTTTCAGAGTGCCCCTTTGGATGCTGGAACTATCTTCACAGTTCTTGCAACATTGAGAAGCATGGGAGAACCTGTCATATTGATTCCAGAAGCACTTTCTGTTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGACGAGATAAAAGATGATGACATTGGAAGAACATCAAAAGATTCTTGCAGCAAGGGAGTTGAAATTCTAGCAGGCAGCTTCAGTTGGGATCTGCAATCATTGCCTCTAACTTTGAGAGAAGTGAATTTTGAGATCGAGTGGGAGCAGACAGTAGCAGTTTGTGGTCCAGTTGGAGCTGGAAAAACATCTCTCCTGTATGCAATACTCGGAGAGATACCCAAAATTTCAGGAACTGTTAGAGTAGAGGGAACACTTGCCTACGTTTCCCAAATTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTATATGGAAAAGCAATGGACCCAACCAGGTATGAATATACCATTAAGGTCTGTGCCTTGGATAAGGATATTGATGGATTTAGCCACGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACTTGAGTGGTGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGTTCATACTGCCTCTATTCTGTTTCATGATTGTGTCAGAACTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATAAAATCCTGGTAATGGAAGGAGGAAAAATTAGTCAAACGGGTAGCTATGAAGATCTGTTGACTGCTGGAACAGCCTTTGAACAGCTTCTGAGTGCTCATAGAGAGGTAATTACAGGAATAGAAACAAACAGTGCAAGCAAAAGAGAAGTTCAAAATGTGGTTACAGTTCAGCCTGAGGATTCTCATATTTCTAATCTCACTAAATGTGGAAGTGATGGAGAAATTTCTACCGAGATTCAACTTACACAAGAGGAAGAAAAGGAGAGTGGTGATGTTGGGTGGCAGCCATTCTGTGACTACATTTTGTTCCCTAAGGGATCTTTGCTTCTATGTTTGAGCATACTAGCACAGTTGACTTTTGTAGGTTTGCAGGCTGCATCAACTTCTTGGCTTGCTATTGCCGATGAGATGTCAAAAGTAACTAGCAGCATCTTAGTTGGAGTTTATAGTGTGATTACCATTTTAAGCATTGTTTTTGTATATCTGAGATCTTACTTTGCTGCACATCTTGGTCTAAAAGCTTCTAAAGCATTCTTCTCTGCCTTCACTGATTCTATCTTTAATGCTCCTATGTTGTTCTTTGATTCAACCCCAGTAGGGAGGATTTTTACCCGAGCTTCATCAGATTTGAGTATTTTAGATTTCGATATACCTTTTTCCACCATCTTTGTGATAGCCGAAGTAACAGAGCTTCTTACAATGATTGTGATAATGGTTTCGGTCACATGGCAAGTGTTCATTGTTGCAATTCTTGCCATGGTGGCTACAAAGTATATCCAGGGCTATTATCAAGCTACTGCAAGAGAAATTATACGAATCAATGGAACTACAAAAGCCCCTCTTATGAATTTTACGTCTGAGTCATATCTTGGTGTGGTTACTATAAGAGCTTTCAACATGGCTGACAGATTTTTCAAGAACTACCTTAACCTTGTTGACACAGATGCCACGATGTTCTTTCATTCAAATGCTGCCATCGAATGGTTAATTCTAAGGATTCAAGCACTTCAGAATTTGACAGTCTTCACTGCAGCTTTGCTGCTTGTTCTACTTCCAAAGGGATATGTGGCCCCTGGTCTTGTGGGACTTTCTCTGTCTTACGGTTTTTCACTGACAGGAACCGTAGTTTATCTGACTAGAATGTTTTGCAACTTATCGAACTATGTGATCTCTGTTGAAAGAATCAAGCAATTCATTCGCATACCAGCAGAAGCCAGTGCAATTGTAGAGGACAATAGACCACCACCTTGTTGGCCTTCTAAAGGTCGAATAGATCTTCAATCTCTAGAGATCAGATATCGTCCAAATTCTCCATTAGTTCTGAAGGGCATCTCTTGCACGTTTCAAGAAGGGAGTAGAGTTGGAGTTGTGGGAAGAACAGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCATAGTTGAGCCTACTGGAGGAGACATTCTTATAGATGGGATTAATATATGTTCAATTGGGTTAAAGGATTTAAGAACAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAAAAAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGTAAATAAACTGGCTCTACAATTGAAAAAAGCATGCACTGAGTTACATTGTTTTTCTCAACTTTTATTCACTAAGAAAATGTTATGTGAGCTTTGA 3960 0.396 MFFMCVFCVSLLSNLIKKRPANASGGFRKRLVPVVTSFCCTLLSVAYFVDGLWNLITKTTGFNQLNLLVCIVRGLVWISIAASLFVQRFQWMKNLCSIWWVFSCTLVSVLNAEILLKGRSFQMFDMAIWAVHILTVLCVFQNHGYFVPQEIPDASLCEPLLVPKEIHKQTGLGHASFFSRFTFSWMNALLSLGYSKPLARDDIPSLNSEDKADFAYQKFAHAWLSLLRSSDNSKNLVMWSVARVYMKENISIAICAFLRTICAVVSPLLVNVFVNYSSSTEEDLKQGMAIMGCLIFAKVVESVSQRHWSFNSRRLGMKMRSSLMAAVYQKQLKLSVLGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTLLFSALQVFLALGVLFGVVGIGALPGLVPLLICGFLNVPFAKILQKYRSEFMIAQDERLRSTSEILSSMKIIKLQSWEYNFKKLVESLRAKELKCLAEVHFMRACGTFIYWLSPTIVSSVILMGCALFQSAPLDAGTIFTVLATLRSMGEPVILIPEALSVMIQVKVSFDRLNTFLLDDEIKDDDIGRTSKDSCSKGVEILAGSFSWDLQSLPLTLREVNFEIEWEQTVAVCGPVGAGKTSLLYAILGEIPKISGTVRVEGTLAYVSQIPWIQSGTIRDNILYGKAMDPTRYEYTIKVCALDKDIDGFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDVHTASILFHDCVRTALRRKTVILVTHQVEFLSEVDKILVMEGGKISQTGSYEDLLTAGTAFEQLLSAHREVITGIETNSASKREVQNVVTVQPEDSHISNLTKCGSDGEISTEIQLTQEEEKESGDVGWQPFCDYILFPKGSLLLCLSILAQLTFVGLQAASTSWLAIADEMSKVTSSILVGVYSVITILSIVFVYLRSYFAAHLGLKASKAFFSAFTDSIFNAPMLFFDSTPVGRIFTRASSDLSILDFDIPFSTIFVIAEVTELLTMIVIMVSVTWQVFIVAILAMVATKYIQGYYQATAREIIRINGTTKAPLMNFTSESYLGVVTIRAFNMADRFFKNYLNLVDTDATMFFHSNAAIEWLILRIQALQNLTVFTAALLLVLLPKGYVAPGLVGLSLSYGFSLTGTVVYLTRMFCNLSNYVISVERIKQFIRIPAEASAIVEDNRPPPCWPSKGRIDLQSLEIRYRPNSPLVLKGISCTFQEGSRVGVVGRTGSGKTTLISALFRIVEPTGGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRKNLDPLGLYSDDEIWKVNKLALQLKKACTELHCFSQLLFTKKMLCEL 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6198g00034 1319 Gene3D - 1163 1310 IPR027417 -
Vium6198g00034 1319 Pfam ABC transporter 1197 1291 IPR003439 GO:0005524
Vium6198g00034 1319 FunFam Multidrug resistance protein associated1 544 808 - -
Vium6198g00034 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 787 IPR027417 -
Vium6198g00034 1319 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 174 1292 - -
Vium6198g00034 1319 CDD ABC_6TM_ABCC_D1 252 539 IPR044746 GO:0140359
Vium6198g00034 1319 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 862 1143 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6198g00034 1319 SMART AAA_5 1206 1316 IPR003593 GO:0016887
Vium6198g00034 1319 SMART AAA_5 592 765 IPR003593 GO:0016887
Vium6198g00034 1319 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 252 531 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6198g00034 1319 Gene3D ABC transporter type 1, transmembrane domain 237 541 IPR036640 GO:0005524|GO:0016020
Vium6198g00034 1319 Gene3D - 542 812 IPR027417 -
Vium6198g00034 1319 Pfam ABC transporter transmembrane region 885 1107 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6198g00034 1319 Pfam ABC transporter transmembrane region 252 511 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6198g00034 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1169 1293 IPR027417 -
Vium6198g00034 1319 FunFam ABC transporter C family member 5 830 1161 - -
Vium6198g00034 1319 CDD ABC_6TM_ABCC_D2 862 1155 IPR044726 GO:0140359
Vium6198g00034 1319 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 548 788 IPR003439 GO:0005524
Vium6198g00034 1319 SUPERFAMILY ABC transporter transmembrane region 238 539 IPR036640 GO:0005524|GO:0016020
Vium6198g00034 1319 Pfam ABC transporter 583 717 IPR003439 GO:0005524
Vium6198g00034 1319 FunFam ABC transporter C family member 10 233 547 - -
Vium6198g00034 1319 ProSitePatterns ABC transporters family signature. 690 704 IPR017871 GO:0005524|GO:0016887
Vium6198g00034 1319 FunFam ATP binding cassette subfamily C member 5 1163 1272 - -
Vium6198g00034 1319 CDD ABCC_MRP_domain1 565 765 - -
Vium6198g00034 1319 Gene3D ABC transporter type 1, transmembrane domain 832 1161 IPR036640 GO:0005524|GO:0016020
Vium6198g00034 1319 SUPERFAMILY ABC transporter transmembrane region 859 1160 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6198g00034 Vium-Chr6198 162693 167469 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6198g00034 559 811 Calmodulin-binding Proteins AT2G36910 27.076 8.08e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6198g00034 - - gmx:100813711 2124.75