Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6198g00012 ATGTACCTTTTGTTCTTCCTACCTATACAAGGTTCTTCACAACAAACACGGTGCATCAGTTCTGCACTTCTTCAATGGCAGCTCAAGATTTTTTTCTTGAAGCAAACATCTATGGATGGTTTGAGTTGGGATACCTCTCAACTTGAAGCAAACACACCAATCCTGTGGAGTACTATTCAGCCACCACCAGATTTTGAAGGAGGCTACTCCATGCCCAATGTTGTCAATCAAATACAAGATTTGCAGAAAGCTCAAACAGGTCTTGTACATAAAGATTCTGAAAGAGTGATTTATCAGTCAGCAGATGCTACCACCGCTTCTTCAGAGATAATGGATGTGATGCAAAGGCAAAACACAAATCTTTTACAGCATGCACCAACAATGATGCCGGTGAAATCAGGAACTGGAGCCAGTTGGGGAGAAGCTTTCACATCTCAATCATACCCGTCTCTGTCGGTCAATGGACCTCAAAGGATGAACCTGATTAGCAACTACATGCCAGATTTCAGCATGGCCCACCAACAACAGCAGCAGCAACAACTTGTCAATGGCTCACAAAATGGAAAGGGTGCTTGCTCTCTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAATAGCAGCACAGACACATCTGTTGAAGATGATAGCATCTCGATGATTTTATCTGACTGTAGAAACTTGTGGAACTTCAGCTACGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCATCGAATGGTAGAAAGGAAGACAAGAGGTGTCCGGTGAAGGAAGTTGATGAAACAGTTTCTCAAAGCTCCTTGGATCGAGGAAAAACAGTACAATCAAAGGCTAATTGTTCAAAGAGGAGCCATGAGGAAACTGGAATGATCAAAGTTGGTGCCACTGGCAGTGGTTCCTGCTTCAGTATTGTGCAGAATTCTTCTTCTGTTGAGGAAGGTGGATTCAGACTCATCTCAGATGATCCATCAAAAAGCAAGAAACCCAGATGGGAGAAGAGTTCCTCTTCAAATAACATCAATTTCCAGCAACCGAATTCCTCCATGTCTTCATCCATTGAGGAACCTGATCCAGAGGTCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGATGCTGCTGAAAAACCAAAGAGGAAGAATGTGAGAATATCAACAGATCCACAAACTGTGGCTGCAAGGCACAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGAGGAAGCAAAATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTTAAGGCACTGGAATGTCTAGGAAACAAAGTTGAAGCAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACATCTCTCAGTCAAATCCATCATTCCCAGGGTTGA 1473 0.4352 MYLLFFLPIQGSSQQTRCISSALLQWQLKIFFLKQTSMDGLSWDTSQLEANTPILWSTIQPPPDFEGGYSMPNVVNQIQDLQKAQTGLVHKDSERVIYQSADATTASSEIMDVMQRQNTNLLQHAPTMMPVKSGTGASWGEAFTSQSYPSLSVNGPQRMNLISNYMPDFSMAHQQQQQQQLVNGSQNGKGACSLESFDCLISATNSSTDTSVEDDSISMILSDCRNLWNFSYGSAASTGESESNASNGRKEDKRCPVKEVDETVSQSSLDRGKTVQSKANCSKRSHEETGMIKVGATGSGSCFSIVQNSSSVEEGGFRLISDDPSKSKKPRWEKSSSSNNINFQQPNSSMSSSIEEPDPEVIAQMKEMIYRAAAFRPVNFGLDAAEKPKRKNVRISTDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKVEAMNCPPTSIAFSFNPSFPMQTSLSQIHHSQG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6198g00012 490 MobiDBLite consensus disorder prediction 237 287 - -
Vium6198g00012 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 400 454 IPR036638 GO:0046983
Vium6198g00012 490 MobiDBLite consensus disorder prediction 319 333 - -
Vium6198g00012 490 MobiDBLite consensus disorder prediction 315 356 - -
Vium6198g00012 490 SMART finulus 401 450 IPR011598 GO:0046983
Vium6198g00012 490 Gene3D - 400 454 IPR036638 GO:0046983
Vium6198g00012 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 395 444 IPR011598 GO:0046983
Vium6198g00012 490 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 187 485 IPR045843 GO:0003700|GO:0006355
Vium6198g00012 490 Pfam Helix-loop-helix DNA-binding domain 405 444 IPR011598 GO:0046983
Vium6198g00012 490 MobiDBLite consensus disorder prediction 245 266 - -
Vium6198g00012 490 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6198g00012 Vium-Chr6198 51145 53345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6198g00012 134 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.989 1.43e-87 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6198g00012 HLH 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6198g00012 - - vra:106773034 860.136