Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium618g00001 ATGGAAGCTTTTGACACAAAATTTACTTGTTCTGGAATGGAGAAGCTAACAAGTGGAACTGGTGGTTGCTCTGATTACACCATCACAGATGTTCTTAATCAGCTTGGGGACAGCCTTAGGAGTTTGGAGGAAGAATGCATGCCTTTGAGCACATATGGTAGGCCAAATGAAACTTGTACTAAATGTTTGAAAGCATGGGAGGATATCAGTGCAAAACCAGACACTACAAGAGGATCAGAGTTAGCAAATATCAGTTCTTATCTTTGTAGGTTTGCTGTGCTTGTCTCACTAACAAGCACAAGAATTTATGATAAGGAATCAATTCTAGAAGTTTATAAATGCCTTGGGGAACATGCCCTTTCTGGAGGATTAGCTTCAGCTAATGAAGAAGTCCAGGCTAGGGGCAATGCTAATATAAATTCAGGTCTCTGGATTGCCTTTGGCATAATAGGAGTTACAGTATTGGTGTTTCTTGGCGCACTAGCATTATTTGTCACAAGAATGAGAAGTGTTACATCAGTACAACATGAGTCTGATTCACCTTCACTGAAGATAACTTTGAAGGATGTTTATGTAGCAACAGACAATCTCAGTGCTTCAAATTTCATAGGCCAAGGCATAGCCGGAAAAGTGTACAAAGGTGTACTCTCCAACAATCAATCTGTTGCAGTGAAGCATATCACCAATGAATGTTACATGGAGACATTTGTCAGAGAAGTGAGAAGCCTTTCTCATGTTAGACATCAGAATTTAGTAGCTTTGCTGGGATACTGTGAAAATGAAGCTGAATGTTTTCTAGTGTATGAGTTATGCCACAATGGAAACCTCTCAGAATGGCTATTCGGCAATGGAAAAGTTCTTTCATGGATTCAAAGACTAGAGATTGCCATTGATAGTGCAAGAGGCCTTGAGTTTCTCCACACCTACCCAAATGGCTGCATCGTTCACCGTGATATAAAGCCATCAAACATTCTTATTGATGCTAACTTCCAAGCAAAGCTTTCAGACTTTGGGTTGTCCAGGGTTATGGACTTGGGTCAATCCTATGTGAGCTCAGAAGTAAGAGGAACATTTGGTTATATTGATCCTGAATATAGGGCAAATCACCATGTAAAAGCCTCAGGAGATGTCTACAGCTTTGGAATAATGTTGTTGCAACTTCTATCAGGACAAAGGATCCTCAACATTGATTTCGAGAGACCAATTTCTCTGGGTAAAATGGCCAGAGATGTTGTTAGAGTTGGTGATATTTCAGAATTTGCTGATCCCAAACTCAAAGGGAAGTACTCAGTTGAAGCATTTGACATCGTACTAAAGCTAGCTTTGTCTTGCATAGGGCTCAAGCGCCAAAGGCCCTGTATAGGTCAGGTGTTATATAGCTTACAAAAGACACTAGATATTTCTTTATAA 1410 0.4007 MEAFDTKFTCSGMEKLTSGTGGCSDYTITDVLNQLGDSLRSLEEECMPLSTYGRPNETCTKCLKAWEDISAKPDTTRGSELANISSYLCRFAVLVSLTSTRIYDKESILEVYKCLGEHALSGGLASANEEVQARGNANINSGLWIAFGIIGVTVLVFLGALALFVTRMRSVTSVQHESDSPSLKITLKDVYVATDNLSASNFIGQGIAGKVYKGVLSNNQSVAVKHITNECYMETFVREVRSLSHVRHQNLVALLGYCENEAECFLVYELCHNGNLSEWLFGNGKVLSWIQRLEIAIDSARGLEFLHTYPNGCIVHRDIKPSNILIDANFQAKLSDFGLSRVMDLGQSYVSSEVRGTFGYIDPEYRANHHVKASGDVYSFGIMLLQLLSGQRILNIDFERPISLGKMARDVVRVGDISEFADPKLKGKYSVEAFDIVLKLALSCIGLKRQRPCIGQVLYSLQKTLDISL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium618g00001 469 FunFam probable receptor-like protein kinase At5g59700 271 469 - -
Vium618g00001 469 Gene3D Transferase(Phosphotransferase) domain 1 271 468 - -
Vium618g00001 469 Gene3D Phosphorylase Kinase; domain 1 162 270 - -
Vium618g00001 469 Pfam Protein kinase domain 201 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium618g00001 469 SUPERFAMILY Protein kinase-like (PK-like) 178 459 IPR011009 -
Vium618g00001 469 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 128 463 - -
Vium618g00001 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Vium618g00001 469 SMART serkin_6 197 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium618g00001 469 ProSiteProfiles Protein kinase domain profile. 197 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium618g00001 469 FunFam Serine/threonine kinase protein 163 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium618g00001 Vium-Chr618 1616 3965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium618g00001 185 467 Receptor kinase-like Gene Family AT1G67720 41.176 6.56e-61 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vium618g00001 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium618g00001 - - vum:124847899 929.087