Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6184g00002 ATGCTTCTATATGCAGCCATAATATCATCATTCTTGTGCTCCCTATACTTGTTCCATCGCAGAAGATCATGCACACACCCCCTCTTGAGAGATTACCCCATCCTCGGAATGTTGCCACCACTGCTCTTCAACTTGTGGCGTGTTCATGATTTTTTCACGGAGGTGCTAACAAAACATGGTGGCACTGGGGAGTTCAAAGGACCATGGTTCACCGATATGAACTATTTGGTCACTTGTGACTCCCTCAAAGTGCAACACATGTTGTGCAAGAACTTCGACAACTATGTCAAGGGACATGACTTTCGTGACATTTTCGAACAATTCGGAGATGGGTTTGTCACTGCCGATTCAGAGACATGGAAGTACATCCGAAACCTTCTCCATTCTTTGATCAAACAAAGAAGGTTCGAAGTGTTTGTTCATCAAACCGTTCAGAAGAAGGTGTACACAAGCTTGCTTTCGATATTGGACCATGCACAACAACAAGGAAGAGTGGTGGATCTTCAAGATATCTTGAATCGATTCACATTCGATAACATATGCTCCACAATCGTAGGACACGATCCTAAGTGTCTTTCCATTGACTTTCCCGATGTTGCAATCGAAAAGGCTTTTAATGAGTCTAAAGAGTGGATATTCTACAGACACGCAGTGCCGGGAAGTGTTTGGAAGCTCCAAAAGTGGCTCCAAATTGGTCAAGAGAAGAAGATGACGGAGGCATGCAAATCGTTTGACGATTTCATATATTCATGCATAGCGTCCAAGCGAGAAGAGTTAAGCAAGTGCAGCAGAGAAGGAATGGAAGAAGCTCCATTTGACTTGCTTACAGCTTTGATCACAGAAGAGAGAGGACGTGTGCATGATGACAAGTTTCTAAGAGATGCTGCGTTTAACTTGTTTGCAGCAGGGAGAGAAACCATTACTTCAGTTCTTACATGGTTCTTTTGGCTTATTGCTAAGCACCCTATAGTGGAAGCCAAGATTATTGAAGAGATCAGAGATAATTTGAAGACAGATGAAAAGAAAAATGATCATGGTTTTCTTGAGGACCATCGTAATCATAATCTTGATCAAGAACAGGATCTGAAGAAATCTGTATCTGGGGTAGTTTTAGGCATGGAAGAGGTGAAAAAGCTGGTTTATCTGCATGGTGCTTTGTGTGAAGTTATGAGACTTTTTCCTCCAGTTCCTATTGAACGGAAGCAAGCAGTTAAAGCCGACACTCTTCCAAGTGGGCATAGAGTAAATGGCAATACAATGATAATCTTTTCTCCGTATGCAATGGGAAGGAATGAAGAGATATGGGGAAAAGATTGTTTGGAGTTCAAGCCTGAAAGATGGATATCTGATAGAGGAGAAATAGTTTATGCAGCAGCTTACAAATTCATAGCTTTTAATGCAGGACCAAGAATCTGTGTGGGAAAAGACTTGGCCTTTGTTCAAATGAAGATGGTGGCTGCTGCTATTTTAAGGAAGTACTGTTTCAAAGTGGAGGAAGGTCATGTTGCAACTCCAACACATTCAATTGTTGTTCTCATGGAGAACGGTTTGAAGGGTAGGATAATGAAAAGAGAAGTTTGA 1581 0.4168 MLLYAAIISSFLCSLYLFHRRRSCTHPLLRDYPILGMLPPLLFNLWRVHDFFTEVLTKHGGTGEFKGPWFTDMNYLVTCDSLKVQHMLCKNFDNYVKGHDFRDIFEQFGDGFVTADSETWKYIRNLLHSLIKQRRFEVFVHQTVQKKVYTSLLSILDHAQQQGRVVDLQDILNRFTFDNICSTIVGHDPKCLSIDFPDVAIEKAFNESKEWIFYRHAVPGSVWKLQKWLQIGQEKKMTEACKSFDDFIYSCIASKREELSKCSREGMEEAPFDLLTALITEERGRVHDDKFLRDAAFNLFAAGRETITSVLTWFFWLIAKHPIVEAKIIEEIRDNLKTDEKKNDHGFLEDHRNHNLDQEQDLKKSVSGVVLGMEEVKKLVYLHGALCEVMRLFPPVPIERKQAVKADTLPSGHRVNGNTMIIFSPYAMGRNEEIWGKDCLEFKPERWISDRGEIVYAAAYKFIAFNAGPRICVGKDLAFVQMKMVAAAILRKYCFKVEEGHVATPTHSIVVLMENGLKGRIMKREV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6184g00002 526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 465 474 IPR017972 GO:0005506|GO:0016705
Vium6184g00002 526 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PRINTS E-class P450 group I signature 462 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PRINTS E-class P450 group I signature 472 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 PANTHER CYTOCHROME P450 21 517 - -
Vium6184g00002 526 CDD CYP86A 64 517 - -
Vium6184g00002 526 Gene3D Cytochrome P450 14 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 SUPERFAMILY Cytochrome P450 30 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6184g00002 526 Pfam Cytochrome P450 47 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6184g00002 Vium-Chr6184 4290 6062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6184g00002 5 524 Cytochrome P450 AT4G39500 41.935 8.84e-144 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6184g00002 - - var:108344605 931.784