Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6170g00004 ATGGTTTGTGAATGCATGGATAATTTGCTCTGTGATGAGGTGTGGCTTTCAAATTCTGAAAACACCTTTGAAGAAGAAGTTGGTGACTTTGTTTCACTCAAGAGTTATGAAAACAAAGAGTTTGAAGAGGCTTTTGCACTGTATCTAGAGAAGGAGGCTTCTTCTTTGCCAGAACAAGATTATGCAAAGTACTTGCACTCCAACAGTTTGTTTGTTTCTAGGTGTAGAGTTATTCAATGGCTTGTCAAGTGTGGAAGTCACTTTAATCTTTCTTTTGGAACAGTTTTCTTGGCTGTTAATTATCTTGATCGCTTTGTATCCATTTGTCAAAGCAATGATTGGAAATACTGGATGCTTGAATTGCTTTCTGTTTCTTGCTTATCAGTTGCCATAAAGTTCAATGAGAAGTCAGCACTTTCCATGAATGAAATTCAGGTGGAGGGCTTGAATTACTCATTCGAATCAAGTGTAATTTTGAAGATGGAGTTGATCCTATTGAAGGCATTGGGGTGGCACCTTAACTCTGTGACCAGTTATTCTTTTGTGGAAATTGTGGATAACGATTTCTTGGAATCTCATCTTTATCAGAAGCTTATTTCACCTGCCACTGAACTCCTTCTCCAAGCTACTTTAGATCAGAAAATGCTGGAATTCAGGCCAAGCATTCTTGGCATATCTGCATTGTGGTGCACTCTTCAACACTTATTACCACAAACATCAGATACTTACATTGCTTATATTATGAGACTCTTGAACCAAAGTCAGAAGGTACGAGATGCTGGCAGTTGCGGCTTGAGAAAATCCTGTGATGGTGGAGGCACGAAGTGCGACATGGAGGTTGCGCGTGATGACTGCCATGGTTCTCTACAGGCGCTGCTTCACGGCGGCATGGTGACTTTGGATGATTTCTGCGGCGGCGGTGGCGTTAGGGTAAGAAAAATGCCCTGGAAAAAGGATCAAGTGATAGTTACCAATACATGGCCAACATCTCAGCCACTTCTGCATATCATAACACCACAAAACAGAGATGTTGCTTGCTTGAGGAGCATATTAGCTTGCAACTGA 1065 0.4131 MVCECMDNLLCDEVWLSNSENTFEEEVGDFVSLKSYENKEFEEAFALYLEKEASSLPEQDYAKYLHSNSLFVSRCRVIQWLVKCGSHFNLSFGTVFLAVNYLDRFVSICQSNDWKYWMLELLSVSCLSVAIKFNEKSALSMNEIQVEGLNYSFESSVILKMELILLKALGWHLNSVTSYSFVEIVDNDFLESHLYQKLISPATELLLQATLDQKMLEFRPSILGISALWCTLQHLLPQTSDTYIAYIMRLLNQSQKVRDAGSCGLRKSCDGGGTKCDMEVARDDCHGSLQALLHGGMVTLDDFCGGGGVRVRKMPWKKDQVIVTNTWPTSQPLLHIITPQNRDVACLRSILACN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6170g00004 354 SUPERFAMILY Cyclin-like 41 174 IPR036915 -
Vium6170g00004 354 Gene3D - 58 174 - -
Vium6170g00004 354 SMART cyclin_7 79 167 IPR013763 -
Vium6170g00004 354 Gene3D - 49 247 - -
Vium6170g00004 354 PANTHER CYCLINS 39 245 IPR039361 -
Vium6170g00004 354 ProSitePatterns Cyclins signature. 74 105 IPR006671 -
Vium6170g00004 354 Pfam Cyclin, N-terminal domain 44 174 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6170g00004 Vium-Chr6170 13560 22323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6170g00004 43 235 Core Cell Cycle Gene Families AT1G70210 33.333 1.45e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6170g00004 K18813 - gmx:100792420 324.324