Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6162g00013 ATGTCTAGCAGAAGGTCACGGTCAAGGCAAACAGGTACTTCAAGGAATATCACCGATGATCAGATCAACGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATACGTGAGAGGCGCTCTGACAAGGTTTCAGCTTCGAAGGTGTTGCAAGAGACATGCAACTATATTAAAAGCTTACACAGGGAAGTGGACGACCTAAGCGAGCGTTTGTCTGAACTCTTGGCTACAACTGACACTGCACAAGCTGCAATAATTAGAAATTTACTTATGCAATAG 279 0.4409 MSSRRSRSRQTGTSRNITDDQINDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIKSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6162g00013 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Vium6162g00013 92 CDD bHLH_AtPRE_like 17 77 - -
Vium6162g00013 92 MobiDBLite consensus disorder prediction 1 20 - -
Vium6162g00013 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vium6162g00013 92 Coils Coil 57 77 - -
Vium6162g00013 92 FunFam Transcription factor ILI6 7 87 - -
Vium6162g00013 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Vium6162g00013 92 Gene3D - 19 88 IPR036638 GO:0046983
Vium6162g00013 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6162g00013 Vium-Chr6162 108408 109993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6162g00013 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.043 8.88e-40 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6162g00013 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6162g00013 - - gmx:100527636 161.77