Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6162g00002 ATGGATTCTCTCAAAATGTTCAAAGGTTACGGCAAAATAGAACGCGATCAGCACGGAATCGAAGATCAGCAACCAAACCCTAAATCCCAAATCTCAAAACCCGTAATCAGCACAACAATTTCCGTCCTCGCAATCCTTTCCCTCACTCTAACTCTCGCCTTCGCTATCGCATCCATTGCGCACCACCAAGCCACCGAGTCACAACAGCTTTCCAACTCGGCCGACTCCATCCGATTCGTCTGCAACGTCACGCGCTTCCCCGCCGCGTGCCTCGCTGCCATCCCGCCCTCCGCCAACGCCACCGATCCCCAAACCATCCTCACCCTCTCGCTCCGCGCCTCGCTCCACGCGCTCCAGAGCCTCGCGTCCTCGCTCCGCGCGACGAAGGGAGGTGCACTCGCCGACTGCAAGGACCAGTTCGACGACGCGCTGAGTCGACTCAACGACTCGCTGTCGGCCACAGCGGCGCTGACCGACAAAGCAGTGAGCGACGTGCATACGTGGGTGAGCGCGGCGGTGACGGACCAGCAGACATGCCTGGACGGACTGGAAGAGGCGGGTGACGCGGCGAGCCTTGAGAAGATGAAGAAAATGATGACGAGGTCCGAGGAGTATACGAGTAACAGTTTGGCTATTGTTGCTAATATTCGCAATTTGTTACGCCATTTCAACATGAAACTCCATTGA 687 0.5691 MDSLKMFKGYGKIERDQHGIEDQQPNPKSQISKPVISTTISVLAILSLTLTLAFAIASIAHHQATESQQLSNSADSIRFVCNVTRFPAACLAAIPPSANATDPQTILTLSLRASLHALQSLASSLRATKGGALADCKDQFDDALSRLNDSLSATAALTDKAVSDVHTWVSAAVTDQQTCLDGLEEAGDAASLEKMKKMMTRSEEYTSNSLAIVANIRNLLRHFNMKLH 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6162g00002 228 FunFam Pectinesterase 73 217 - -
Vium6162g00002 228 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 218 IPR035513 -
Vium6162g00002 228 SMART PMEI_2 72 212 IPR006501 GO:0004857
Vium6162g00002 228 NCBIfam pectinesterase inhibitor domain 47 215 IPR006501 GO:0004857
Vium6162g00002 228 Pfam Plant invertase/pectin methylesterase inhibitor 76 212 IPR006501 GO:0004857
Vium6162g00002 228 CDD PMEI-like_3 80 216 - -
Vium6162g00002 228 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 216 IPR035513 -
Vium6162g00002 228 PANTHER PECTINESTERASE 49 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6162g00002 Vium-Chr6162 8022 8949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6162g00002 1 228 Carbohydrate Esterase AT1G53840 33.594 1.74e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6162g00002 - - gmx:100789567 288.115