Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6160g00001 ATGTCCTCTTCTTTGTCGTCGTCCAATTCCCCCTGCGCCGCGTGCAAGATTCAGCGCCGGAAGTGCACGCAGGAGTGCGTCTTCGCGCCGTATTTTCCGCCGGACAACCCGCAGCGCTTTGCCTACGTGCACAAGGTCTTCGGTGCCAGCAACGTCGCAAAGCTTCTCAACGAACTCAACGCGGCGCAGCGCGAGGACGCGGTTAAGTCCCTCGCCTACGAGGCCGAGGCGCGTCTGCGGGACCCCGTCTACGGTTGCGTCGGTCTCATCTCCATCCTCCAGCACCGCCTCAAGCAGTTGCAGACCGAGCTCCACCACGCCAAGAAGGAACTCGCCTCCTACATCGGACCTCACGCCATGCTCCCTCCTCCTCCTCCGCCTCCGCCGCAACCGCGCACCTTCTCTCTCTTTCCCTTCAAAGCGGCGCCTCCTCCTACTCATCAGGATCTTTTCGCCTTCACTGACGACGGTGCTTCCGCTTCTCACTCTTCCCACGCCGCCTTCAACCACCTCGCTGTTCTCTCGCCTACCCTCGCCTCCGATCACACCTTCCCTCACGCACCCACCCATCCTCTCGCACTTCCGCACCACCAACACCTAATGCTCTCCCCTATGCAATCCAAGCCCCAGACCGACCCTGCTTAA 645 0.6171 MSSSLSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTELHHAKKELASYIGPHAMLPPPPPPPPQPRTFSLFPFKAAPPPTHQDLFAFTDDGASASHSSHAAFNHLAVLSPTLASDHTFPHAPTHPLALPHHQHLMLSPMQSKPQTDPA 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6160g00001 214 Coils Coil 90 110 - -
Vium6160g00001 214 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vium6160g00001 214 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vium6160g00001 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6160g00001 Vium-Chr6160 9893 11702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6160g00001 5 132 AS2 family AT5G66870 76.515 4.33e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium6160g00001 LOB 2.4e-42 No_clan