Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6159g00002 ATGGAAGAGAGAAATGATAATGGTGAGAAACTGGATGAGGTTATGCTACCGGGTTTCAGGTTCCATCCAACAGACGAGGAGCTTGTTGGATTTTATCTAAAGAGAAAGATTCAGCAGAGGCCACTTTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAGTATGATCCTTGGGATCTTCCAAAGTTGGCGACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTATAGGAACAGTGCAAGGCCTAATAGGGTAACTAGAGCTGGGTTCTGGAAGGCTACAGGGACGGATCGCCCTATATATTCCTCGGAGGGTTCCAAGTGTATTGGTCTGAAGAAATCCCTAGTGTTCTACAAAGGTAGAGCTGCCAAAGGGATTAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCACTAACTCATCCTCATCCCCTAAGAAGTTCATGGACAAGACCATTCCTGCTAACGAAACCTGGGCAATCTGCAGAATCTTCAAGAAAACCAATGCTACAGCACAAAGAGCTCTCTCTCACTCTTGGGTCTCACCCTTACCTGAAACCACCACATCAGATCATATGTTAGCCACTGATAGATATGGCAACCAATTTTCTACAGAAAACATGCCATTGCCAAAGAAAACTAGCTTAGCCAGCCAGTTTTGTACTTTTAATAATAATGACTCACAACATTCAACCACTACTAGTAGCAGCACCCCTTGTCCTATAGATATTCTAGCTTCTTATAACAGACCAATTATTAATCCATTAATGCTTTACAAGCCCTTAGATCTGTTACCCATTTCAAATGGAGACCTTAGCAGTGGCTTAATATTCTCATCTCCTATTGAAACTTCAACAAACTGTGCTAAATCTTCGATGGATGTTTCTTCAATGCTAATGAGTACCTCAACTTCTGTGCTTGGAGAATTTAATAGTAAGACCTCTGAGGGAATGTGCACAAACTTTGGTGGGTTACAGGAGCATAGTAACGGCTACCAAATACCACTACTACGTGAGATGCAAGGAAGCTTTGGCAACCACGACGACAATGTGTTGGTAAAGATTCCTAACGTGAACGTGCCTCGTGTTGGAGACCAACAATCGGAGACAGTGCGATCCATTGGGTTTCCATTCAGTATTGGCGATGCATGGAAGTCAAATGTGCTTTGGGATACTTCATCTTTGTCCTTGTGA 1215 0.4263 MEERNDNGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTNSSSSPKKFMDKTIPANETWAICRIFKKTNATAQRALSHSWVSPLPETTTSDHMLATDRYGNQFSTENMPLPKKTSLASQFCTFNNNDSQHSTTTSSSTPCPIDILASYNRPIINPLMLYKPLDLLPISNGDLSSGLIFSSPIETSTNCAKSSMDVSSMLMSTSTSVLGEFNSKTSEGMCTNFGGLQEHSNGYQIPLLREMQGSFGNHDDNVLVKIPNVNVPRVGDQQSETVRSIGFPFSIGDAWKSNVLWDTSSLSL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6159g00002 404 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Vium6159g00002 404 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Vium6159g00002 404 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
Vium6159g00002 404 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Vium6159g00002 404 FunFam NAC domain-containing protein 35 24 177 - -
Vium6159g00002 404 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6159g00002 Vium-Chr6159 38072 40390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6159g00002 1 319 NAC Transcription Factor Family AT1G26870 57.831 9.87e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6159g00002 NAM 7.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6159g00002 - - vra:106768003 785.793