Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6142g00004 ATGGGTTACGAAGACGATCCGTACCGCGACGAGGACGGTGAGCCCTTAATGGATTACGATGACATTCAATCCGACCGCGAGCCTTCTCCGGAGCCGCGCCACCAGCTCGACGATTACGAGGATGATGTCAACGACGAGTGGCAGGGCCGGGATCGGTCGCAGACGCCGGTGTACGACAACGATTCTGCGCGCTCGAAGCCGCGGAAAAGGCTGATCAAGAAAAGCGATGCTGGGAAGCAGTCGGTGGCGCCGGAGCTCGAGGATGAGGATGAGGGATATCTTCCGGAGGCGAGTTTTGACGAGGGGGATGGAAGGAAGAGGAAGAAGGGAAAGGAGGTTGGGAGTGGGAAGAAGGAAAAAAGGCTGAAGGGTGAGAAGAGATTTGGTGGTGGCAGTAGCTCTAAATTTGGGGGTTCTAAAAAAGGTTTAGGTGGTAAGTCTGGGAAGGATCATGATGGGGAAGTTAAGGAAATGTGGGATACCATTGCCGGGGGAGATTCTGAGGATGATCACGAGGGTGTCAGGAATCTTGATGATGACAACTTCATAGACGACACTGGGGTGGAACCTGCTTATTATGGTAGTGATGAACCACGTTCTCCTGGCGATGCTCCTCAGGCAGAGGAAGGTGAAGAGGATGAAGAAATCAAGGATCTTTTCAAGATAGGGAAGAAAAAGAAGAAGAACGAGAGAAGTCCGGCTGAAATAGCATTATTAGTGGAGAATGTCATGGCTGAACTTGAGGTTACAGCTGAAGAAGATGCAGATCTTAATAGGCAAGGGAAACCTGCCATTAATAAACTCAAGAAGTTACCTCTTCTCACAGAAGTCCTCTCCAAGAAGCAGCTCCAACTAGAGTTTTTAGATCATGGAGTCCTGACGTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTACCCAATATAAATATACGCACTGAAATTTTGAAGATATTGAATGATTTTCCTATAGACCTAGAGCAATATGATAGAAGAGAACAATTGAAGAAGAGTGGCCTTGGAAAAGTCATTATGTTTTTATCAAAATCTGATGAAGAAATAAGTGTAAACCGGAAACTGGCCAAGGAGCTGGTTGACAAGTGGAGCCGGCCTATATTTAATAAGAGTACCCGATTTGAAGACATGAGAAATGTAGAGGATGACAGGGTTCCTTTTAGGAGACCATCTCTAAAGAAGCCAACTAATAAAGCTGCAGGAATATCGAGAGATAGCGATCTTGATCTGGAACTTTCGCAACCTAAGGGTGGACAGTCCTCCTCCAGGCAGCACGCTTCGAGGCCGGAAGCGACACCTTTAGATTTTGTCATACGACCCCAGTCTAAAATTGATCCAGAAGAGATTAGAGCTCGGGCAAAACAAGCTGCCCAAGACCAGCAGCGTATGAAGATGAATAAAAAATTGCAGCAGTTAAGGGCACCCAAAAAGAGGCAGCTCCAGGCTACAAAATTAAGTGTGGAGGGTCGTGGAATGGTGAAATATTTGTAA 1512 0.4683 MGYEDDPYRDEDGEPLMDYDDIQSDREPSPEPRHQLDDYEDDVNDEWQGRDRSQTPVYDNDSARSKPRKRLIKKSDAGKQSVAPELEDEDEGYLPEASFDEGDGRKRKKGKEVGSGKKEKRLKGEKRFGGGSSSKFGGSKKGLGGKSGKDHDGEVKEMWDTIAGGDSEDDHEGVRNLDDDNFIDDTGVEPAYYGSDEPRSPGDAPQAEEGEEDEEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDADLNRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEILKILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPFRRPSLKKPTNKAAGISRDSDLDLELSQPKGGQSSSRQHASRPEATPLDFVIRPQSKIDPEEIRARAKQAAQDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMVKYL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6142g00004 503 Pfam TFIIS helical bundle-like domain 319 374 IPR017923 -
Vium6142g00004 503 MobiDBLite consensus disorder prediction 19 49 - -
Vium6142g00004 503 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 233 380 IPR035441 -
Vium6142g00004 503 MobiDBLite consensus disorder prediction 144 182 - -
Vium6142g00004 503 MobiDBLite consensus disorder prediction 448 464 - -
Vium6142g00004 503 PANTHER PROTEIN IWS1 HOMOLOG 1 1 503 IPR044204 GO:0009742|GO:0032784
Vium6142g00004 503 ProSiteProfiles TFIIS N-terminal domain profile. 294 377 IPR017923 -
Vium6142g00004 503 MobiDBLite consensus disorder prediction 393 483 - -
Vium6142g00004 503 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 289 377 IPR035441 -
Vium6142g00004 503 MobiDBLite consensus disorder prediction 420 435 - -
Vium6142g00004 503 MobiDBLite consensus disorder prediction 1 18 - -
Vium6142g00004 503 MobiDBLite consensus disorder prediction 1 215 - -
Vium6142g00004 503 MobiDBLite consensus disorder prediction 98 128 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium6142g00004 Med26 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6142g00004 K17498 - gmx:100801805 833.943