Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6138g00007 ATGGTGGAAACTAAACCAGGGCTTAAGCGGTTTTGGGACCGCTTCGGTGGTCGATCATCGGGATCCACTTCTTCCTCTTCGTACGACTCCTCGGACAGCATCCAAAACCAAAACTACATATACGATGTGTTTATCAGTTTCAGAGGTCCTGACACCCGCAACTCTTTCGTTGATCATCTCTGCTCTCATCTCCTCCGAAAGGGCATTTTCGTCTTCAAGGATGACCACAATCTACAGAAAGGAGAATCCATTTCCCCACAGCTTCTACAAGCAATTCAACTTTCACGCCTTTCTATCATTGTCTTTTCCAAAAATTATGCTTCTTCCTCTTGGTGTTTAGATGAAATGTCCGCTATAGCTTCTTGCAAACAACAATCAAGCCAAATTGTTTTCCCCATTTTCTATGATGTAGATCCATCTCATGTAAGACATCAAAATGGGGTATACGAGAATGACTTCGTTTCACACAGATGCAAATTTCAAAAAGATCGGGATAAGGTTCCTGGATGGGAGAGGGCTATGACGGATTTGGCCAATTCAGCTGGTTGGGATGTGAGGGACAAGCCAGAGTTTGAACAGATTCAAAACATTGTTCAAGCAGTAATTAAAAAATTAGGTCATAAGTTTTCATGGTTTGTGAATGACCTTATTGGGATACAACCACGCGTACAAGCATTAGAAGACAAATTAAGATTAAACTCAAACAGTGATGATGTTCAAGTTTTAGGAATTTGGGGAATGAATGGGATAGGAAAGACAACTCAAGCAGCTGTCCTATTTGACAAAATTTCTCATAGGTTTGATGCTTCTTGTTTCATTGAGGATGTGAGCAAACTTTATAGAGACGGTGGCAATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTTGGTCAAAAAGGTCTAGATATGTGTAGTCCCTTTCAAATATCTGGGATTGTAAGAACTAGGATACACGACATAAGGGTTCTCATAGTTCTTGACAATGTCGATGAATTAGAGCAATTGGAAAATTTGGCCATAAAACCAAAATTGCTTTTGAAGGGAAGTAGAATGGTTATTACCACCACAGATATGCATATTCTGAAAGTCTATGAGGGTGGCGTGATACACAAGGTTCCATTATTGAATGATAATGATGCTCGTGAATTGTTCTGTAGGAAAGCCTTCAAAAGTGAAGAGCAAAGCAGTAGTTGTGAGGCGTTGATTCCTGAGGTACTCAAGTATGCCCAATGTCTTCCATTGGCAATTAGAGTGTTGGGTTCTTTCTTGTGTACTCGAGATGCGGTTGAATGGAGAGATGTATTGAATAGATTGCAAAGTAGTCCCGATAAAAAAATTATGAATGTACTTCAAATAAGTGTTGATGGACTAAACCATGAGGAGAAACAAATATTTTTACACATTGCATGTTTCTTTAAACGGGAGAGGGTGGATTATGTTAAGCGAATTCTAGACTGTTGTGAGTTATACCCTCACATTGGAATTTCAAGACTCGTTGAGAAATCACTCATCACTATTAGCAATGAAGAAATTCATATGCATGAATTGTTGCAAGAATTGGGAAAGAAAATGGTTTGGGACCAATCTCCACAAGAACCAAGATTCTGGAGTAGAATATGGCTTCATAAAGACTTCTTGCAAGTCTTGACAGCAGAAACGGGAACAGAAAAGGTGAAAGCCATAGTTTTAAATAAAGAAGAAGAAATGTCGGAATGTAGTATTGGTGGATTGTCAAGAATGAAGGAGCTTACATTGCTTATATTATATCACACAAAAGTTTCGGGAAGCTTGGAGTTTCTTTCAGACAGGCTGCGATATCTATTTTGGCATGATTATCCTTTTGATTCTCTGCCTCCATATTTTACGGTCTCTAATCTCGTGGAGTTGAATATGCCTAACAGTCACATTATAAGTTTATGGCACGGTAACAAGGTAATATATTCACATTCTTTCCATTTTCGTCTGGGTTTGAATAAATCACCAAAAGATAGAATTTCTTTTTTAGTTATATAA 2016 0.3829 MVETKPGLKRFWDRFGGRSSGSTSSSSYDSSDSIQNQNYIYDVFISFRGPDTRNSFVDHLCSHLLRKGIFVFKDDHNLQKGESISPQLLQAIQLSRLSIIVFSKNYASSSWCLDEMSAIASCKQQSSQIVFPIFYDVDPSHVRHQNGVYENDFVSHRCKFQKDRDKVPGWERAMTDLANSAGWDVRDKPEFEQIQNIVQAVIKKLGHKFSWFVNDLIGIQPRVQALEDKLRLNSNSDDVQVLGIWGMNGIGKTTQAAVLFDKISHRFDASCFIEDVSKLYRDGGNTAVQKQIIHQTFGQKGLDMCSPFQISGIVRTRIHDIRVLIVLDNVDELEQLENLAIKPKLLLKGSRMVITTTDMHILKVYEGGVIHKVPLLNDNDARELFCRKAFKSEEQSSSCEALIPEVLKYAQCLPLAIRVLGSFLCTRDAVEWRDVLNRLQSSPDKKIMNVLQISVDGLNHEEKQIFLHIACFFKRERVDYVKRILDCCELYPHIGISRLVEKSLITISNEEIHMHELLQELGKKMVWDQSPQEPRFWSRIWLHKDFLQVLTAETGTEKVKAIVLNKEEEMSECSIGGLSRMKELTLLILYHTKVSGSLEFLSDRLRYLFWHDYPFDSLPPYFTVSNLVELNMPNSHIISLWHGNKVIYSHSFHFRLGLNKSPKDRISFLVI 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6138g00007 671 SMART till_3 40 180 IPR000157 GO:0007165
Vium6138g00007 671 SUPERFAMILY "Winged helix" DNA-binding domain 445 550 IPR036390 -
Vium6138g00007 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 469 IPR027417 -
Vium6138g00007 671 Gene3D - 212 368 IPR027417 -
Vium6138g00007 671 PRINTS Disease resistance protein signature 241 256 - -
Vium6138g00007 671 PRINTS Disease resistance protein signature 410 424 - -
Vium6138g00007 671 PRINTS Disease resistance protein signature 317 331 - -
Vium6138g00007 671 SUPERFAMILY L domain-like 578 643 - -
Vium6138g00007 671 Gene3D - 375 459 IPR042197 -
Vium6138g00007 671 Pfam NB-ARC domain 223 449 IPR002182 GO:0043531
Vium6138g00007 671 Pfam Leucine Rich Repeat 626 645 IPR011713 -
Vium6138g00007 671 FunFam Disease resistance protein (TIR-NBS-LRR class) 37 207 - -
Vium6138g00007 671 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 647 IPR044974 GO:0006952
Vium6138g00007 671 ProSiteProfiles TIR domain profile. 39 205 IPR000157 GO:0007165
Vium6138g00007 671 Gene3D - 38 210 IPR035897 -
Vium6138g00007 671 Pfam TIR domain 41 208 IPR000157 GO:0007165
Vium6138g00007 671 SUPERFAMILY Toll/Interleukin receptor TIR domain 30 183 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6138g00007 Vium-Chr6138 64667 67352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6138g00007 12 668 WRKY Transcription Factor Family AT4G12020 27.096 3.32e-60 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6138g00007 - - vum:124842545 1335.86