Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6138g00005 ATGCTGAAACCTAAATCAGGGCTTCAACGGTTTTGGGACCGCTTCGGTACTCGATCATCGGGATCCACTTCTTCTTCATACGACTCCTCGGACACCATCCAAAACCAACACTACAGATACGATGTGTTTATCAGTTTCAGAGGTCCTGACGCCCGCAACTCTTTTGTTGATCATCTCTGCTCTCATCTCCTCCGAAAGGGCATTTTCGTCTTCAAAGATGACCACGATCTACAGAAAGGAGAATCCATTTCCCCACAGCTTCTACAAGCAATTCAACTTTCACGCCTTTCTATCATTGTCTTTTCCAAAAATTATGCTTCTTCCTCTTGGTGTTTAGATGAAATGTCCGCTATAGCTTCTTGCAAACAACAATCAAGCCAAATTGTTTTCCCCATTTTCTATGATGTAGATCCATCTCATGTAAGACATCAAAATGGGGTATACAAGAATAACTTCTTTTCACACAGACGGAAATTCGGAAAAGATCGGGACAAAGTTCTTAGATGGAAGAGGGCTATGACGGATTTGGCCAATTCAGCTGGTTGGGATATGAGGGACAAGCCAGAGTTTGCACAGATTCAAAGCATTGTTCAAGCAGTAATTAATAAATTAGGTCATAAGTTTTCAAGGTCTGTGAATGACCTTATTGGGATACAACCACGCGTACAAGCATTAGAAGACAAATTAAGATTAAGCTCAAACAGTGATGATGTTCGAGTTTTAGGAATTTGGGGAATGAATGGAATAGGAAAGACTACTCATGCAGCTGTCCTATATGACAAAATCTCTCATAGGTTTGATGCTTCTTGTTTCATTGAGGATGTGAACAAACTTTATAGGGATGGTGGCTATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTTCGTGAAAACATAGATATGAGTAATCCTATTGAAATATCAGGGATTGTAGAAAATAGGCTACACAGCATAAAGGTCCTCATAGTTCTGGACAATGTTGATGAATTAGAGCAATTGGAAAATTTGGCCATAAAACCTAGATTGCTTTTGAAGGGAAGTAGGATGGTTATTACAACGACAGATGAACATATTCTGAAAGTGTACGAGGGTGATGTGTTGAGACACAAGCTTCCCTTATTGAACGATGCGGATGCTCGTGAATTATTCTGTAGAAACGCTTTCAAATGTGAAGATCAAAGCAGTAATTGTGCGGCGTTGATTCCTGAAGTACTCAAATATGCCCAATGCCTTCCACTGGCAATTAAAGTGTTGGGTTCTTTCTTGTGTACTCGAGATGCTGATGACTGGAGAGATGTGTTGAATAGATTGGAGAATAGTCCAGATGACAAAATTATGAATGTACTTCAAATAAGTGTTGATGGACTACAACGTGAGGAAAAACAAATATTTTTACACATTGCTTGTTTCTTTAAAGGGGAGAGGGTGGACTATGTTAAGCGAATTCTAAAATGTTGTGGGTTACACCCTGACATTGGAATTTCAAGACTTACTGAGAAATCACTCATCACTATTAGCGATGAAGAAATTCATATGCATGAATTGTTACAAGAATTAGGAAAGAAAATGGTTCGGGACCAATCTCCGGAGGAACCAGGATCATGGAGTAGAATATGGCTTCATAAAGACTTCTTGCATGCCTTGACAGCAGAAACGGGAACAGAGAAGGTGAAAGCCATAGTTTTAAATAAAAAAGAAGAAATGTCAGAATGTATTGTTGACGGATTGTCAAGAATGAAGGAACTTACATTACTGATATTATATCACACAAGAGTTTCAGGAAGGCTGGAGGTTCTTTCAGACAGACTGCAATATCTATTGTGGCATGATTATCCTTTTGCTTCTCTGCCTCCATACTTTACAGCCTTTAATCTTGTGGAATTGAATATGCCTAACAGTCACATCACACATTTATGGGCAGGCGGCAAGAGCTGTCCCAACTTGAAAAGGATTGATTTAAGCAACTCCAAGTACCTGAGTGAGACTCCAGATTTTTCCAGAATCATAAAACTTGAAAGGCTAGATCTTTCTGGATGTTCAAGTTTATCTTATGTCCATTCATCAATTGGACTTCTTAAGAAACTTGCTTTCTTGAATTTACGAAATTGTTACAATCTAGTTTGCATTGACTTTGGCGGTGTATGGAATATGAGTTCTCTGAGAGTTCTACATCTCTCGGGTTGTTCTAAACTGGAAAGCACCCCAGATTTTACAAGGGCAACAGATCTTGAGTACCTTGACATGGATGAATGTACAAGCTTATCCACTATTCATCAATCTATTGGAGTCCTTTCAAATCTTACATTCTTAAGTTTAAGAAGATGTAGGAAGCTTGTCAGTATACCAAATGATATCAATTCCTTGGTATCTCTTCAAACTCTAGATTTATCCGGTTGTTATAACAGTATGAATCCGATGCCAAGACAAGCTCTTTCGTCCCATTTAAAATCCTTGATTTTTCTGGACATTAGTAATTCCAATCTAAAAGAAGTACCTGATGCTATTGGAGACTTAAGATGTTTAGAAAGACTGAATCTACAGGGAAACAATTTTCTTTCAATACCTGATTCCTTCCGTCAGCTTCATTGTCTAGCATATTTAAACTTGTCTCATTGTCATAAGCTCATATATTTGCCTGACCTTCCAACTGAAGGAGATAAATCAGGGGGGAAGTATTTTAAAACGGTATCTGGATCTCGTGATCATAGATCAGGCTTTTATCTTGTTAATTGTACTAATATTAAATTGTCTCGACTTGAGTTCCTCGGACTTGAACGCTTCTTCCACCTAATTAAGGAACCCTGTAATTTTCGGTGTGGCTTTGACCTTATTCTTCCTTGGGATATGGGATTTCGACCTGTCTTCGGTGAAACATTCTTAGGGAATTCAATTATAAGGATACTTCAATGTGTTATGAATGACAACTGGATTGGCTTTGGCTTTTATGTTACATTTAGTCGTGGGATTGATTTTTCTTCTTCTCACTGTTCATTATCCCATCCACTTTATCTTTCTTTTGAAAGTGAATACACAGAAGAGTACTTTGATATGCGATTTAATTCGGAGAGAGATGAATGCTTTATGTCTAGGCATATTTGGATAATTTACATCAGTCGAGAACACTGTCATTTTGTGAAAACAGGGGCGCATATCACATTTAAAGCGCAACCATATCTTAAGATCGAAGAATGGGGGATGAGACCTATACTCAAACAAGATATAAGTGACAGTAAAGGGAAGAAATACATAAAATTTTCCAAATTAAATCATGATCATGTGGACTTTGAGTATGTAGAAAAAAGCAACAGTGGTTCAGGGCCGAAAATCCAGCTTCCTTACAATTGGTGTGTCACAGAAGAAGAGCAAGTTGAGAATACTGATGCAAAGGCGAAAGAAAATAATCTCTCCAATGCAGGGCTTTAA 3426 0.3806 MLKPKSGLQRFWDRFGTRSSGSTSSSYDSSDTIQNQHYRYDVFISFRGPDARNSFVDHLCSHLLRKGIFVFKDDHDLQKGESISPQLLQAIQLSRLSIIVFSKNYASSSWCLDEMSAIASCKQQSSQIVFPIFYDVDPSHVRHQNGVYKNNFFSHRRKFGKDRDKVLRWKRAMTDLANSAGWDMRDKPEFAQIQSIVQAVINKLGHKFSRSVNDLIGIQPRVQALEDKLRLSSNSDDVRVLGIWGMNGIGKTTHAAVLYDKISHRFDASCFIEDVNKLYRDGGYTAVQKQIIHQTFRENIDMSNPIEISGIVENRLHSIKVLIVLDNVDELEQLENLAIKPRLLLKGSRMVITTTDEHILKVYEGDVLRHKLPLLNDADARELFCRNAFKCEDQSSNCAALIPEVLKYAQCLPLAIKVLGSFLCTRDADDWRDVLNRLENSPDDKIMNVLQISVDGLQREEKQIFLHIACFFKGERVDYVKRILKCCGLHPDIGISRLTEKSLITISDEEIHMHELLQELGKKMVRDQSPEEPGSWSRIWLHKDFLHALTAETGTEKVKAIVLNKKEEMSECIVDGLSRMKELTLLILYHTRVSGRLEVLSDRLQYLLWHDYPFASLPPYFTAFNLVELNMPNSHITHLWAGGKSCPNLKRIDLSNSKYLSETPDFSRIIKLERLDLSGCSSLSYVHSSIGLLKKLAFLNLRNCYNLVCIDFGGVWNMSSLRVLHLSGCSKLESTPDFTRATDLEYLDMDECTSLSTIHQSIGVLSNLTFLSLRRCRKLVSIPNDINSLVSLQTLDLSGCYNSMNPMPRQALSSHLKSLIFLDISNSNLKEVPDAIGDLRCLERLNLQGNNFLSIPDSFRQLHCLAYLNLSHCHKLIYLPDLPTEGDKSGGKYFKTVSGSRDHRSGFYLVNCTNIKLSRLEFLGLERFFHLIKEPCNFRCGFDLILPWDMGFRPVFGETFLGNSIIRILQCVMNDNWIGFGFYVTFSRGIDFSSSHCSLSHPLYLSFESEYTEEYFDMRFNSERDECFMSRHIWIIYISREHCHFVKTGAHITFKAQPYLKIEEWGMRPILKQDISDSKGKKYIKFSKLNHDHVDFEYVEKSNSGSGPKIQLPYNWCVTEEEQVENTDAKAKENNLSNAGL 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6138g00005 1141 ProSiteProfiles TIR domain profile. 38 204 IPR000157 GO:0007165
Vium6138g00005 1141 Gene3D Ribonuclease Inhibitor 715 805 IPR032675 -
Vium6138g00005 1141 Gene3D Ribonuclease Inhibitor 806 940 IPR032675 -
Vium6138g00005 1141 SUPERFAMILY "Winged helix" DNA-binding domain 444 549 IPR036390 -
Vium6138g00005 1141 PRINTS Disease resistance protein signature 315 329 - -
Vium6138g00005 1141 PRINTS Disease resistance protein signature 409 423 - -
Vium6138g00005 1141 PRINTS Disease resistance protein signature 716 732 - -
Vium6138g00005 1141 PRINTS Disease resistance protein signature 240 255 - -
Vium6138g00005 1141 Pfam NB-ARC domain 222 447 IPR002182 GO:0043531
Vium6138g00005 1141 Gene3D - 207 367 IPR027417 -
Vium6138g00005 1141 FunFam Disease resistance protein (TIR-NBS-LRR class) 36 206 - -
Vium6138g00005 1141 ProSiteProfiles Leucine-rich repeat profile. 841 862 IPR001611 GO:0005515
Vium6138g00005 1141 Pfam Leucine Rich Repeat 625 642 IPR011713 -
Vium6138g00005 1141 SUPERFAMILY Toll/Interleukin receptor TIR domain 30 182 IPR035897 -
Vium6138g00005 1141 SMART till_3 39 179 IPR000157 GO:0007165
Vium6138g00005 1141 Gene3D - 37 206 IPR035897 -
Vium6138g00005 1141 Gene3D Ribonuclease Inhibitor 494 714 IPR032675 -
Vium6138g00005 1141 Gene3D - 374 458 IPR042197 -
Vium6138g00005 1141 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 705 IPR044974 GO:0006952
Vium6138g00005 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 468 IPR027417 -
Vium6138g00005 1141 Pfam TIR domain 40 210 IPR000157 GO:0007165
Vium6138g00005 1141 SUPERFAMILY L domain-like 577 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6138g00005 Vium-Chr6138 54123 59268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6138g00005 717 871 WRKY Transcription Factor Family AT4G12020 36.782 3.54e-15 79.3