Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6138g00004 ATGCTACCAGTCGAGTTGGGGGAACTCTCCATGCGGCGGCAACTGCAAGACCCTCTGCTCAACAACGAAGAGCTCAGGGTGGAACTGAATACTGTGGACGAACGTCGTGACCGAGCATTCCTCAGGGCAAAAGCCTACAAACGAATGGTAGAAAGGAAATACAATACCAAAGTACAACCCCAGAGCTTCAAAGAAGGCGACCTGGTCTGGAGAAAAACAGGAGGCGCCGGAAGAGCGGCCACTCATGGCAAGCTCGCAGCGAAGTGGGAGGGACCCTTCAGGGTAACCGAAAACCTTCAAAATGGGGCTTATACTGTATTCTTTTATGCACAACTTTTGTTGAGAGGTGCGACCCTCTCATCAAACAGTCACTACCATCCACCGATACCAAAGAAGAAATCAGGGAGGAGATGGTTTTGGAGCCATTTCTGTGGTCGATCATCTTCTTCCGATGTGATCTCATCAGTATCTACTTCTTCTACCCATCACTCATCCGACACTGTCCAAAACCAAGACTACAGATACGATGTGTTCATCAGTTTCAGAGGCCCTGATAACCGCAACTCTTTCGTTGATCATCTCTACTATCATCTTCTCCGGAAGGGTATTTTTGTCTTTAAAGACGACCGCAAGCTCCGCAAAGGAGAATCCATTTCATCACAGCTTCCACAAGCAATCAGAGGTTCTCGAATTTCTATCATCGTTTTCTCCTAAGATTATCCTTCCTCGTCGTGGTGTTTGGACGAAATGGCCACTATAGCTGATTGCAAACAGCAATCTAACCAAACTGTTTTCCCTGTTTTCTATGATGTTGATCCGTCTCACGTACGACATCAGAATGGGGTATACGAGAAGGCCTTCGTTTCGCTCAGACAGAAATTCAAAGGAAAGCCAGATAAAGTTTATCGATGGGAGAGAGCTATGAATTGGTTTGGCACGTTAGCTGGTTGGGATGTCAGAAACAGGTCCGAATCTGAAGTAATTGAAGATATTGTACAAACTGTAATAAAAAATTTGGGTCATAAATTCTCTTGGTTTGTTGATGACCTTATTGGGATACAACCACGGGTACAAGCATTAGAAGATAAACTAAGATTAAGCTCAAAGAGTGATGTTGTTCAAGTTTTAGGAATTTGGGGAATGAATGGAATAGGAAAGACGACTCATGCAGCTGTCCTATATGACAAAATCTCTCATAGGTTTGATGCTTCTTGTTTCATTGAGGATGTGAGCAAACTTTATAGGGATGGTGGCCATACTGCTGTACACAAAGACATCATCAATCAAACTTTACGTGAAAACATAGATATGAGTAGTCCTATTGAAATATCAGGGATTGTAAAAAATAGGCTTTGCAACATAAAACTCCTCATAGTTCTGGACAATATTAATGAATTAGAGCAATTGGAAAATTTGGCCGTAAAGCCCAAATTGCTTTTGAAGGGAAGTAGAATGGTTATTACCACCACAGATGAGCATATTTTGAAAGTGTATGAGGGTTATGTGTTGATACACAAGGTTCCATTATTGAATGATAAGGATGCTGGTGAATTGTTCTATAGAAGGGCTTTCAAAAGTGAAGAGCAAAACAGTAATTGTGCCGCAATGATTCCTGAAGTACTCAAATACGCTCAATGTCTTCCATTGGCAATTAGAGTGTTGGGTTCTTTCTTGTGTACTCGAGATGCTGATGAATGGAGAGATGTGTTGAATAGATTGGAGAATGGTCCAGATGACAAAATTATGAATGTACTTCAAATAAGTGTTGATGGACTACAACGTGAGGAAAAACAAATATTTTTACACATTGCTTGTTTCTTTAAAGGGGAGAGGGTGGATTATGTTAAGCGAATTCTAGACGGTTGTGGGTTACATCCTCGCATTGGAATTTCAAGACTCATTGAGAAATCACTCATCACTATTAGTAATGAAGAAATTCTTATGCATGAATTGTTACGAAAATTAGGAAAGAAAATGGTTCGTGATGAATCACCCGAGGAGCCAGGATCATGGAGTAGAATATGGCTTCATCAAGACTTCTTTCAAGCCTTGACGAGAGAAACGGGGACAGAGAGGGTGAGAGCCATCGTTTTAAATAAAAAGGAAGAACTGTCAGAGTGTAATGTTAATGGATTGTCAAGAATGAAGGAGCTCACATTGCTGATATTATATCACACAAAACTTTCAGGAAGGTTGGAATTTCTTTCTGACAGATTGCAATATGTTCTATGGCATGATTATCCTTTTGCTTCTCTGCCTCCATATTTTACAGTCTCTAATCTTGTGGAGTTGAATATGCCTAACAGTCACATCACACGTTTATGGGAAGGCCACAAGAGCTGCCCCAACTTGAAAAGGATTGATTTAAGCAACTCCAGTTATCTAATTGAGACTCCAGATTTTTCCAGAATCATAAAACTTGAAAGGCTAGATCTTTCTGGATGTACAAGTTTATCACATGTTCATTCATCAATTGGTCTTCTTAAGAAGCTTGCATTCTTGAGTTTACGAAATTGTTGCAATCTATTTATCATTGACTTTGGCAGTGTAGGGAACATGAGTTCTCTGAAAGTCCTACATCTCTCTGGTTGTAGTAGGCTTGAAAGCTCGCAAGATTTTACAAGGACAACACATCTTGAGTACCTTGACATGGATGAATGTACAAGCTTATCCACTATTCATGAATCTATTGGAGTCCTTTCAAGTCTTACTTTCTTGGGTTTGAGAGGTTGCACAAAGCTTGTCAGTATACCAAATGATATTAATTCCTTGGTATCTCTTCAAACTCTATATTTATGCCGTTGTTTTAAACTTACAAATCTGCTCCCAAGACAAGCTTCTAAATCCCATTTGGAATGTTTGATTTTTCTAGACCTAAGTTTTTGCAATCTACTAGAAGTACCTGATGCTATTGGAGAGTTAAGATGTCTGGAAAGACTGAATCTACAGGGAAACAATTTTGTTTCTATACCTGACTCCTTCAGGGTGCTTCATTGTCTAGCATATATAAACTTGTCGCACTGTCATGAGCTTAAATCTTTGTCTAACCTTCCATTTGAAGGAGCTGCATCAGGGGGGAAGTATTTTAGAGCAGTATCCGGATCTCGTGATCATAGGTCAGGCTTATATCTTTTTAATTGTATCAAGATGGTTGATATATTGTCCAAACCTTGGGATTGTTGGAGTTTGGAACTTGCATGGCTTTTCAGACTAATTAAGGAATCCTGTCATTTTCGATGTGGCTTTGACATTGGTGTTCCTTGGGGTTTGGAAATTCCGCGGTGGTTCACCAAAAGATTTGAAGGGGATTCAGTTATAAGGATAGAGGAATTTAATGTGGATGAAGACTGGATGGGCTTTGCATTTTGTGTTATATTTGAGGGAAACATTGCTCCTGTTGTCGGTGATTCTTCATCGCACCCATTATATCTTTCTTTCGAAGTAAACATACAGAAGAATACTGTGATATGCCACATTATTTGA 3483 0.3997 MLPVELGELSMRRQLQDPLLNNEELRVELNTVDERRDRAFLRAKAYKRMVERKYNTKVQPQSFKEGDLVWRKTGGAGRAATHGKLAAKWEGPFRVTENLQNGAYTVFFYAQLLLRGATLSSNSHYHPPIPKKKSGRRWFWSHFCGRSSSSDVISSVSTSSTHHSSDTVQNQDYRYDVFISFRGPDNRNSFVDHLYYHLLRKGIFVFKDDRKLRKGESISSQLPQAIRGSRISIIVFSXDYPSSSWCLDEMATIADCKQQSNQTVFPVFYDVDPSHVRHQNGVYEKAFVSLRQKFKGKPDKVYRWERAMNWFGTLAGWDVRNRSESEVIEDIVQTVIKNLGHKFSWFVDDLIGIQPRVQALEDKLRLSSKSDVVQVLGIWGMNGIGKTTHAAVLYDKISHRFDASCFIEDVSKLYRDGGHTAVHKDIINQTLRENIDMSSPIEISGIVKNRLCNIKLLIVLDNINELEQLENLAVKPKLLLKGSRMVITTTDEHILKVYEGYVLIHKVPLLNDKDAGELFYRRAFKSEEQNSNCAAMIPEVLKYAQCLPLAIRVLGSFLCTRDADEWRDVLNRLENGPDDKIMNVLQISVDGLQREEKQIFLHIACFFKGERVDYVKRILDGCGLHPRIGISRLIEKSLITISNEEILMHELLRKLGKKMVRDESPEEPGSWSRIWLHQDFFQALTRETGTERVRAIVLNKKEELSECNVNGLSRMKELTLLILYHTKLSGRLEFLSDRLQYVLWHDYPFASLPPYFTVSNLVELNMPNSHITRLWEGHKSCPNLKRIDLSNSSYLIETPDFSRIIKLERLDLSGCTSLSHVHSSIGLLKKLAFLSLRNCCNLFIIDFGSVGNMSSLKVLHLSGCSRLESSQDFTRTTHLEYLDMDECTSLSTIHESIGVLSSLTFLGLRGCTKLVSIPNDINSLVSLQTLYLCRCFKLTNLLPRQASKSHLECLIFLDLSFCNLLEVPDAIGELRCLERLNLQGNNFVSIPDSFRVLHCLAYINLSHCHELKSLSNLPFEGAASGGKYFRAVSGSRDHRSGLYLFNCIKMVDILSKPWDCWSLELAWLFRLIKESCHFRCGFDIGVPWGLEIPRWFTKRFEGDSVIRIEEFNVDEDWMGFAFCVIFEGNIAPVVGDSSSHPLYLSFEVNIQKNTVICHII 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6138g00004 1160 ProSiteProfiles TIR domain profile. 173 339 IPR000157 GO:0007165
Vium6138g00004 1160 Gene3D Ribonuclease Inhibitor 696 871 IPR032675 -
Vium6138g00004 1160 Gene3D Ribonuclease Inhibitor 872 1064 IPR032675 -
Vium6138g00004 1160 Pfam Leucine Rich Repeat 760 777 IPR011713 -
Vium6138g00004 1160 SUPERFAMILY Toll/Interleukin receptor TIR domain 164 317 IPR035897 -
Vium6138g00004 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 603 IPR027417 -
Vium6138g00004 1160 SMART till_3 174 314 IPR000157 GO:0007165
Vium6138g00004 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 175 869 IPR044974 GO:0006952
Vium6138g00004 1160 Gene3D - 347 502 IPR027417 -
Vium6138g00004 1160 PRINTS Disease resistance protein signature 851 867 - -
Vium6138g00004 1160 PRINTS Disease resistance protein signature 544 558 - -
Vium6138g00004 1160 PRINTS Disease resistance protein signature 375 390 - -
Vium6138g00004 1160 PRINTS Disease resistance protein signature 450 464 - -
Vium6138g00004 1160 Gene3D - 509 593 IPR042197 -
Vium6138g00004 1160 Pfam NB-ARC domain 366 577 IPR002182 GO:0043531
Vium6138g00004 1160 SUPERFAMILY L domain-like 660 1047 - -
Vium6138g00004 1160 FunFam Disease resistance protein (TIR-NBS-LRR class) 171 341 - -
Vium6138g00004 1160 Gene3D - 169 344 IPR035897 -
Vium6138g00004 1160 Pfam TIR domain 175 341 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6138g00004 Vium-Chr6138 41894 52970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6138g00004 175 980 WRKY Transcription Factor Family AT4G12020 29.904 3.04e-84 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6138g00004 - - vra:106778496 1476.46