LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6137g00002	ATGTACTCCATGATAGGAATACAAAGGATAAGTTTTACTTTCTTGTTACTGCTGAATTTCAGGTCATTCATTACAAAGGCTGAAGAACAGTCATACCTGGGAAGTAGCTGCAATAACACCGCCCAACAAACTCTCAGCACTGCATACCAAACCAACCTTGATAGAATCCTGACTTGGATGTCCTCAGATTCAGGCACAAGCAATGGTTACAACATCACCACCATAGGCTCCAACAATAGCTCTGTGTACGGCCTCTATTATTGTGGGGGTGGCTTGGCTGGATACTTTTGTCATGTTTGTATTTCCACTGCTGCAAGAGAAACCCCTCGGCTCTGCTCCAATAGGGTGTCTGCTGTGGTGTGGAATGATTACTGCCTTATAAGGTACTCAAATGAAGAATTCTTTGGGAAAGCTATGACATATCCAACATGGCATGTTCTTGGAACAAAAAACATATCGAATATAACAGAGATTCAGATAGGTGAGGATTTTTTGAGAAGTTTGATCAGAAAAGCAACTAATGGAACCAACCAGTTGTATTATAAGGACGGCTTCAATTTGAGTGCCACTGAGAGTAGGTATAGCGTGGTGCAATGCTCTAGAGATCTCACAAATGAAGTGTGCAGACAATGTTTGGAGGACATACTAGCTGAACTTCACAAATGCTGTGAACAAAAACTAGTATGGAATATTTGGTCTGGAAGTTGTTTGATTCGGTATGATGATTATATGTTCTATCTTCTTAACACCCAACCACCTTCAGCTCCTGCTCCCAATGTACAAGATAAACAAGGGAGTAATAACAGGTCAAAAATATTGATCATTACCTTCAGTGTGACTGGGCCAATAATTGTACTATGTTTCAGCGTGTATTCCTTCTGGCATAGGAAAAGCGTGAGAAAAGAACGGCTTCCTCTACCATCATTTCACAAAATTCAACCAGGGGAAATGTGGAACACGGACCTGCCTAGAATCCCATTAATCACAATTCTAGAGAGTACTGATAACTTTTCAGAAGCATCTAAATTGGGGGAAGGCGGATTCGGCTCCGTTTACAAGGGAACTCTGCCTGATGGAACGCAAATTGCAGTAAAAAGACTCTCAGAATTTTCTGGTCAAGGCTCAGAGGAGTTCAAAAATGAAGTAATGTTTATAGCTAAATTGAGGCATCGTAACCTAGTAAGACTTTTAGCATGTTGCTCGGAGGGAAATGAAAAGATACTCGTATATGAGTATTTGCCGAATAAAAGTCTCGACTTTCACCTATTTGATGTTGAGAGAAGAAAACAATTCGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATGTTTTACCTTCATGAGGACTCTCAACTGAGAGTAATTCATAGAGATCTCAAAGCCAGCAACGTTCTATTAGACCATGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAGTGGGACAGAACCAAGCAAATACAAAACGAGTTATGGGCACTTATGGATACATGGCTCCTGAATATGCTATGGAAGGACTATTTTCAGTGAAATCTGATGTTTTCAGCTTCGGAGTTCTTGTTCTAGAAATCATTTGTGGGAGAAAGAATGGTAGATTCTACCTGTCAGATGGTCAAATTCTCCTTGTATACGCTTGGAGAATATGGTATGAAGGAAAATGTTTGGAATTGATGGATCCAATACTAGAAAAATCCTTCATAGGCAGTGAAGTACAGAGGTGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGACGCAAGAGATAGACCAACCATGTCCGATGTTGTTGTAATGCTGGTGAGTGACACAGTGGCCATTCCAAAACCCAAGCACCCAGCCTTTTCAGTAGGAAGAATGGTCTCAGAGAAAGGCTCCACATCAAGAAGTTCCAACAATCGTTCCATTTATGATATAACATCCTCCATTACTTTACCTAGGTAA	1965	0.4031	MYSMIGIQRISFTFLLLLNFRSFITKAEEQSYLGSSCNNTAQQTLSTAYQTNLDRILTWMSSDSGTSNGYNITTIGSNNSSVYGLYYCGGGLAGYFCHVCISTAARETPRLCSNRVSAVVWNDYCLIRYSNEEFFGKAMTYPTWHVLGTKNISNITEIQIGEDFLRSLIRKATNGTNQLYYKDGFNLSATESRYSVVQCSRDLTNEVCRQCLEDILAELHKCCEQKLVWNIWSGSCLIRYDDYMFYLLNTQPPSAPAPNVQDKQGSNNRSKILIITFSVTGPIIVLCFSVYSFWHRKSVRKERLPLPSFHKIQPGEMWNTDLPRIPLITILESTDNFSEASKLGEGGFGSVYKGTLPDGTQIAVKRLSEFSGQGSEEFKNEVMFIAKLRHRNLVRLLACCSEGNEKILVYEYLPNKSLDFHLFDVERRKQFDWKLRLSIINGIARGMFYLHEDSQLRVIHRDLKASNVLLDHDMNPKISDFGLARAFEVGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNGRFYLSDGQILLVYAWRIWYEGKCLELMDPILEKSFIGSEVQRCIQIGLLCVQEDARDRPTMSDVVVMLVSDTVAIPKPKHPAFSVGRMVSEKGSTSRSSNNRSIYDITSSITLPR	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6137g00002	654	Gene3D	Transferase(Phosphotransferase) domain 1	413	614	-	-
	Vium6137g00002	654	ProSiteProfiles	Gnk2-homologous domain profile.	31	134	IPR002902	-
	Vium6137g00002	654	ProSiteProfiles	Gnk2-homologous domain profile.	140	245	IPR002902	-
	Vium6137g00002	654	Gene3D	-	144	245	IPR038408	-
	Vium6137g00002	654	Gene3D	-	29	134	IPR038408	-
	Vium6137g00002	654	Pfam	Protein tyrosine and serine/threonine kinase	341	605	IPR001245	GO:0004672\|GO:0006468
	Vium6137g00002	654	FunFam	Cysteine-rich receptor-like protein kinase 10	300	412	-	-
	Vium6137g00002	654	FunFam	cysteine-rich receptor-like protein kinase 10	413	614	-	-
	Vium6137g00002	654	ProSitePatterns	Protein kinases ATP-binding region signature.	343	365	IPR017441	GO:0005524
	Vium6137g00002	654	SMART	serkin_6	337	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6137g00002	654	Pfam	Salt stress response/antifungal	37	131	IPR002902	-
	Vium6137g00002	654	Pfam	Salt stress response/antifungal	164	243	IPR002902	-
	Vium6137g00002	654	ProSiteProfiles	Protein kinase domain profile.	337	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6137g00002	654	SUPERFAMILY	Protein kinase-like (PK-like)	313	607	IPR011009	-
	Vium6137g00002	654	CDD	STKc_IRAK	343	607	-	-
	Vium6137g00002	654	Gene3D	Phosphorylase Kinase; domain 1	302	412	-	-
	Vium6137g00002	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Vium6137g00002	654	FunFam	Cysteine-rich receptor-like protein kinase 28	33	133	-	-
	Vium6137g00002	654	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	78	641	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6137g00002	Vium-Chr6137	18784	26636	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6137g00002	11	654	Receptor kinase-like Gene Family	AT4G05200	40.448	4.59e-168	495

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium6137g00002		PK_Tyr_Ser-Thr	5.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6137g00002	-		-	pvu:PHAVU_011G194300g	980.319