Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6135g00003 ATGGTTGTTAAAGTCGTAGTAGAGAACAGAAAGGTAGATGAATTGGACAAAGCAATTTCTGTGGCCTCTAGAGATCCTTCTTTGTATGGCATTGATGAAGTGGAGCTTGAGAACAGGAGGAGGTGGACCAGTGATGCTCGTAGCCAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCGGGAACACGCTCAAATATAACAAACAATGCTAATCTAAATGGGATGCGCAGGGAATTAATGAGGCTTACTAATTCTCATCAATCTGCGTCTGACCCATATGCTACCCAGGATAACGACGATTTCATAGAATCAGAATCGGACAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAACTTAGTATAAGTGTACAAAGAATTGGAGATGTTGGACTTACTATACATGATGAGCTCGTTGCACAGGAGAAGATTGTTGATGAACTGGGTAATGAGATGGACAGTACATCCAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATCCTGGGTTTGCTGGCTCTGTTCATGTTCCTCTTTATCTTGGTATTCTTCACCTAG 606 0.4274 MVVKVVVENRKVDELDKAISVASRDPSLYGIDEVELENRRRWTSDARSQVSTAKKAVEAGTRSNITNNANLNGMRRELMRLTNSHQSASDPYATQDNDDFIESESDRQMLLIKRQDEELDELSISVQRIGDVGLTIHDELVAQEKIVDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFMFLFILVFFT 201
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium6135g00003 201 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 109 171 IPR000727 -
Vium6135g00003 201 SUPERFAMILY t-snare proteins 11 57 IPR010989 GO:0016020|GO:0016192
Vium6135g00003 201 Coils Coil 147 167 - -
Vium6135g00003 201 FunFam syntaxin-61 isoform X1 112 173 - -
Vium6135g00003 201 PANTHER SYNTAXIN 10 190 IPR045242 -
Vium6135g00003 201 Pfam SNARE domain 146 197 IPR000727 -
Vium6135g00003 201 Pfam Syntaxin 6, N-terminal 11 54 IPR015260 GO:0016020|GO:0048193
Vium6135g00003 201 SUPERFAMILY SNARE fusion complex 107 171 - -
Vium6135g00003 201 Gene3D - 7 60 - -
Vium6135g00003 201 CDD SNARE_Qc 112 169 - -
Vium6135g00003 201 Gene3D - 116 180 - -
Vium6135g00003 201 SMART tSNARE_6 104 171 IPR000727 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium6135g00003 Vium-Chr6135 2131 4330 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6135g00003 1 201 SNARE and Associated Proteins AT1G28490 65.842 6.44e-91 263
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6135g00003 K08500 - gmx:100793612 302.753