Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium6135g00003 | ATGGTTGTTAAAGTCGTAGTAGAGAACAGAAAGGTAGATGAATTGGACAAAGCAATTTCTGTGGCCTCTAGAGATCCTTCTTTGTATGGCATTGATGAAGTGGAGCTTGAGAACAGGAGGAGGTGGACCAGTGATGCTCGTAGCCAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCGGGAACACGCTCAAATATAACAAACAATGCTAATCTAAATGGGATGCGCAGGGAATTAATGAGGCTTACTAATTCTCATCAATCTGCGTCTGACCCATATGCTACCCAGGATAACGACGATTTCATAGAATCAGAATCGGACAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAACTTAGTATAAGTGTACAAAGAATTGGAGATGTTGGACTTACTATACATGATGAGCTCGTTGCACAGGAGAAGATTGTTGATGAACTGGGTAATGAGATGGACAGTACATCCAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATCCTGGGTTTGCTGGCTCTGTTCATGTTCCTCTTTATCTTGGTATTCTTCACCTAG | 606 | 0.4274 | MVVKVVVENRKVDELDKAISVASRDPSLYGIDEVELENRRRWTSDARSQVSTAKKAVEAGTRSNITNNANLNGMRRELMRLTNSHQSASDPYATQDNDDFIESESDRQMLLIKRQDEELDELSISVQRIGDVGLTIHDELVAQEKIVDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFMFLFILVFFT | 201 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium6135g00003 | 201 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 109 | 171 | IPR000727 | - | |
Vium6135g00003 | 201 | SUPERFAMILY | t-snare proteins | 11 | 57 | IPR010989 | GO:0016020|GO:0016192 | |
Vium6135g00003 | 201 | Coils | Coil | 147 | 167 | - | - | |
Vium6135g00003 | 201 | FunFam | syntaxin-61 isoform X1 | 112 | 173 | - | - | |
Vium6135g00003 | 201 | PANTHER | SYNTAXIN | 10 | 190 | IPR045242 | - | |
Vium6135g00003 | 201 | Pfam | SNARE domain | 146 | 197 | IPR000727 | - | |
Vium6135g00003 | 201 | Pfam | Syntaxin 6, N-terminal | 11 | 54 | IPR015260 | GO:0016020|GO:0048193 | |
Vium6135g00003 | 201 | SUPERFAMILY | SNARE fusion complex | 107 | 171 | - | - | |
Vium6135g00003 | 201 | Gene3D | - | 7 | 60 | - | - | |
Vium6135g00003 | 201 | CDD | SNARE_Qc | 112 | 169 | - | - | |
Vium6135g00003 | 201 | Gene3D | - | 116 | 180 | - | - | |
Vium6135g00003 | 201 | SMART | tSNARE_6 | 104 | 171 | IPR000727 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium6135g00003 | Vium-Chr6135 | 2131 | 4330 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium6135g00003 | 1 | 201 | SNARE and Associated Proteins | AT1G28490 | 65.842 | 6.44e-91 | 263 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium6135g00003 | K08500 | - | gmx:100793612 | 302.753 |