Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6135g00002 ATGATGGCGAGCGATCCAATCTTTCAAAGGAAGTTCTTACTAGCTGTGAAAGCATTGATTGGCAGAAAGGTAGATGAATTGGACAAAGCAATTTCTGTGGCCTCTAGAGATCCTTCTTTGTATGGCATTGATGAAGTGGAGCTTGAGAACAGGAGGAGGTGGACCAGTGATGCTCGTAGCCAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCGGGAACACGCTCAAATATAACAAACAATGCTAATCTAAATGGGATGCGCAGGGAATTAATGAGGCTTACTAATTCTCATCAATCTGCGTCTGACCCATATGCTACCCAGGATAACGACGATTTCATAGAATCAGAATCGGACAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAACTTAGTATAAGTGTACAAAGAATTGGAGATGTTGGACTTACTATACATGATGAGCTCGTTGCACAGGAGAAGATTGTTGATGAACTGGGTAATGAGATGGACAGTACATCCAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATCCTGGGTTTGCTGGCTCTGTTCATGTTCCTCTTTATCTTGGTATTCTTCACCTAG 642 0.4299 MMASDPIFQRKFLLAVKALIGRKVDELDKAISVASRDPSLYGIDEVELENRRRWTSDARSQVSTAKKAVEAGTRSNITNNANLNGMRRELMRLTNSHQSASDPYATQDNDDFIESESDRQMLLIKRQDEELDELSISVQRIGDVGLTIHDELVAQEKIVDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFMFLFILVFFT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6135g00002 213 SUPERFAMILY SNARE fusion complex 119 183 - -
Vium6135g00002 213 Gene3D - 128 192 - -
Vium6135g00002 213 PANTHER SYNTAXIN 24 202 IPR045242 -
Vium6135g00002 213 Pfam Syntaxin 6, N-terminal 22 66 IPR015260 GO:0016020|GO:0048193
Vium6135g00002 213 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 121 183 IPR000727 -
Vium6135g00002 213 SUPERFAMILY t-snare proteins 20 69 IPR010989 GO:0016020|GO:0016192
Vium6135g00002 213 Gene3D - 10 72 - -
Vium6135g00002 213 FunFam syntaxin-61 isoform X1 124 185 - -
Vium6135g00002 213 CDD SNARE_Qc 124 181 - -
Vium6135g00002 213 Coils Coil 159 179 - -
Vium6135g00002 213 Pfam SNARE domain 158 209 IPR000727 -
Vium6135g00002 213 SMART tSNARE_6 116 183 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6135g00002 Vium-Chr6135 2131 5579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6135g00002 14 213 SNARE and Associated Proteins AT1G28490 65.842 8.51e-89 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6135g00002 K08500 - gmx:100793612 302.753