Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6135g00001 ATGCCTTCAGCTCAAGATCCATTCTATGTTGTGAAGGAGGAGATTCAAGAATCTATTGATAAGCTGCAATCTACTTTTCGCAAATGGGAAAAAGCTGCTGATGATGGCGAGCGATCCAATCTTTCAAAGGAAGTTCTTACTAGCTGTGAAAGCATTGATTGGCAGGTAGATGAATTGGACAAAGCAATTTCTGTGGCCTCTAGAGATCCTTCTTTGTATGGCATTGATGAAGTGGAGCTTGAGAACAGGAGGAGGTGGACCAGTGATGCTCGTAGCCAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCGGGAACACGCTCAAATATAACAAACAATGCTAATCTAAATGGGATGCGCAGGGAATTAATGAGGCTTACTAATTCTCATCAATCTGCGTCTGACCCATATGCTACCCAGGATAACGACGATTTCATAGAATCAGAATCGGACAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAACTTAGTATAAGTGTACAAAGAATTGGAGATGTTGGACTTACTATACATGATGAGCTCGTTGCACAGGAGAAGATTGTTGATGAACTGGGTAATGAGATGGACAGTACATCCAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATCCTGGGTTTGCTGGCTCTGTTCATGTTCCTCTTTATCTTGGTATTCTTCACCTAG 738 0.4268 MPSAQDPFYVVKEEIQESIDKLQSTFRKWEKAADDGERSNLSKEVLTSCESIDWQVDELDKAISVASRDPSLYGIDEVELENRRRWTSDARSQVSTAKKAVEAGTRSNITNNANLNGMRRELMRLTNSHQSASDPYATQDNDDFIESESDRQMLLIKRQDEELDELSISVQRIGDVGLTIHDELVAQEKIVDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFMFLFILVFFT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6135g00001 245 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Vium6135g00001 245 SMART tSNARE_6 148 215 IPR000727 -
Vium6135g00001 245 Pfam SNARE domain 190 241 IPR000727 -
Vium6135g00001 245 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
Vium6135g00001 245 CDD SNARE_Qc 156 213 - -
Vium6135g00001 245 SUPERFAMILY SNARE fusion complex 151 215 - -
Vium6135g00001 245 Coils Coil 12 32 - -
Vium6135g00001 245 Coils Coil 191 211 - -
Vium6135g00001 245 PANTHER SYNTAXIN 12 234 IPR045242 -
Vium6135g00001 245 Gene3D - 2 104 - -
Vium6135g00001 245 FunFam Syntaxin 10 3 104 - -
Vium6135g00001 245 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Vium6135g00001 245 FunFam syntaxin-61 isoform X1 156 217 - -
Vium6135g00001 245 Gene3D - 160 224 - -
Vium6135g00001 245 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6135g00001 Vium-Chr6135 2131 5604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6135g00001 53 245 SNARE and Associated Proteins AT1G28490 67.010 6.12e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6135g00001 K08500 - gmx:100793612 399.438