Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6130g00001 ATGAAGAACAACGAATCTCCTTGTTCCAAGTCACAGTCTCCACCAAAATCTGATCCATTGTGTGATTCTTCAAATCCATCTCACAAGAGGAAAGCAGGTAGAAAGAAGTTTAGGGAGACACGGCACCCTGTGTATAGGGGTGTACGCCAAAGAAACGGAAACAGATGGGTGTGTGAAATTAGGGAACCAGTGAAAAAGTCAAGGATCTGGGTAGGCACATACCCTTCTCCTGAAATGGCTGCTAGGGCACACGACGTGGCTGTTTTAGCCCTTAATGGCATCTCTGCTAAGTTCAATTTCCCCGATTCAGTTTCCCTTCTTCCTCTTGCAAAGTCTTCTTCTGCTGCAGATATAAGGGAAGCAGCAAAAACTGCTACTGTTGATGATACTTTCACGCCAAACACATCTTTTTCTTGTTCCTCTCATGGAAATTCTAGTTTTGAAGAAAATGGGAATGCAGAAGAGAGTTTTTTGAACACGAGCATCCACAATGATGAGTCTGAAACAGTGTTCTTTGATGAGGAGGCACTGTATAATATGCCAGGTTTGTTGGATAGTATGGCCGAGGGATTGCTAATTACTCCACCCTCTAGAGCACTGGACTGGGACCATTCTGATTCTGAAATAGACCTTACTCTGTGGAATAACTGA 651 0.4363 MKNNESPCSKSQSPPKSDPLCDSSNPSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEIREPVKKSRIWVGTYPSPEMAARAHDVAVLALNGISAKFNFPDSVSLLPLAKSSSAADIREAAKTATVDDTFTPNTSFSCSSHGNSSFEENGNAEESFLNTSIHNDESETVFFDEEALYNMPGLLDSMAEGLLITPPSRALDWDHSDSEIDLTLWNN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6130g00001 216 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Vium6130g00001 216 MobiDBLite consensus disorder prediction 1 42 - -
Vium6130g00001 216 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vium6130g00001 216 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vium6130g00001 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 215 IPR045277 GO:0003700
Vium6130g00001 216 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Vium6130g00001 216 MobiDBLite consensus disorder prediction 1 22 - -
Vium6130g00001 216 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vium6130g00001 216 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Vium6130g00001 216 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Vium6130g00001 216 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6130g00001 Vium-Chr6130 6986 7636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6130g00001 29 215 AP2-EREBP Transcription Factor Family AT4G25490 47.938 1.02e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6130g00001 AP2 7.4e-13 CL0081