Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium612g00002 ATGAGTACTGCCGGGTGGTCAGATGAGGAACGCTCTGTCATTGGAGATACGGCTGAAATTGGGTTTCTAGATTTTGAGGAAGAGAAATCTGTTTGCAGTTACTTTGATTATGAAGGTCCAGTTGTTGTATCTGCCCCATTTCCATTTGTGGAAGGCAAGCCTCAATCTGTACTTATGGGGGACACTGCTGTGGATTTAATAAGCATTAGGAATACTACTGATGAACCAGTGGACCTGTGGAGTGTTCATATTTTTGCCTCAAATCCTACGGACAGTTTCACTCTCTCTCTTACAGAGCCTCTACCGGAAAATTCAAATGCAGAAGGAGAACAGAGCTGCTTAGAATCTTTCTCTTTGGAGGACAGGGTGCTTCAACCTCGTGAAAACTTGAAAGTATGGCTGTCTTGCAAGACAAAAGAAATTGGCATGTGTTCATCAGTCATATATTTTGATGCTGGAGATGAAAAAATTGAAAGGGTGGTTTTCCTCTTAGTTGAAGACAAAATCTCCAAGTCGTTGGCTTCTAAGAGGCCCTATTCAAGAGCAAAGAAAAAGGACAAATTTGTTGTGGATAATTATGTTCCAGGTTCACGTCCTGCAGGGAAGCCAACTCGAAGATACATAAATAGGCTTCCGAAATATCACATTCCCAGGGACATGAGAGAGTTGCTTGAGAATAATCAGATCCCTCAAGTTGTTGAACAAGGTCTTACTAGAAGTACTTATTCATCTTATTTCAAAACATTAATAATAATGGAAGAGATCCAGTTGGAGGAAGACATGAGGATTTATGATATGGAATCTATATCGATGAGAAAGAGGAACAATCGATTTTTGTCTATGGAGGTTCCTGGGCTTGCTGAGAGAAGACCATCTCTGGTTCATGGGGATTATATATTTGTTAAGCTCGCATATGATAATAGCAACAGACAGCCTTATCAGGGCTTTATCCACCGAGTTGAAGCTGATGAAATTTATTTGAAGTTTGATCCTGAATTTCACTTTTACCACAAGGACGAAAATACATATGATGTTCACTTCACCTATAACAGGATCAATATGAGAAGGCTATATCAAGCAGCTGAGGCAACACAAAACTTGGGTACCGACATCCTCTTTCCATCTGCATCAATAAAGAGACACATTAAAACTACTGCTCTAGTACCCATATCTGGTACTTTTAACGAGGAGCAAATTTGTTCAATCAAAATGATTCTTGGTTGCAAAGGTGCACCACCTTATTTGATTCATGGACCCCCTGGTACGGGAAAGACAAGGACAATAGTAGAAGTAATCCTGCAGCTCTACAAATATCACAAGAATGCTCGGATTCTTGTGTGTGCACCCTCAAATAGTGCAGCAGACTACATACTGGAGAGACTCCTTACTCAACAGGACATTGAGTTGCGAGAAAATGAAATATTCAGGCTCAATGCATCTACTAGGCCATACGAAGATGTTAAACCTGAAATTATCCGCTTCTGCTTCTTTGATGATATGGTATTTAAGTGTCCCCCAGTGAACGCCCTCAGTTATTATAAGATCATAATATCCACATATATGAGTGCGTCTCTTCTTTATGCTGAAGATCTTGCCCGTGGTCACTTTTCCCATATTTTTTTGGACGAGGCTGGCCAAGCTTCTGAACCTGAAACCTTGATCCCTGTATCCCACCTCTGCACAATGAAAACTGTTGTTGTTCTGGCTGGAGACCAATTGCAATTGGGTCCAGTAATATATTCCAAGAAAGCAGATGAGTTTGGTTTGGGGGTTTCATATATGGAACGATTGTCTCAACTCCCGCTATATGCCAGTGGAGATACTAATTATGTAACACGATTGATTCGGAACTATCGATGCCACCCAGCAATATTGCATCTTCCTTCAAAGTTGTTCTATTGTGGGGAATTGCTTGCTTGTAGAGATTCCACAACTTTCCTGACGATGGGAGAGTTGCTACCTAACAAGGAATTTCCTATTCTTTTCTATGGCATCCAAGGATGCGATGAAAGAGAAGGAAATAACCCATCGTGGTTTAACCGCATTGAAGTCAGTAAGGTTATAGAACTTGTCAGTAGACTGATTGCAGGAGGGAACATAAAGGAGAAAAACATTGGCATAATAACTCCATATAGGCAACAAGTGTCAAAAATAAAACAGACACTTGAAAATCTAGATATGCCTGACATCAAAGTGGGTAGTGTCGAGCAATTCCAAGGACAAGAGATGGAGGTTATTATCATATCAACAGTTCGATCAACTATCAAACATAACGAGTTTGACAGAGTCCACTGTCTTGGCTTTTTGAGCAATTATAGAAGGTTTAACGTGGCTATAACTCGTGCTATATCATTGCTGGTTATAATTGGGAATCCGCATATAATCTGCAAGGATGACTATTGGAGCCAAATGTTGTGGTACTGTGTGGACAATTCATCTTACCAGGGTTGTTCTCTTCCTGAGAGGGTGGAACCTTATGACGATGAAGACGCTGAAGAGAACCCATACTCGACTGAAGATAATGCGTGGCCCTCAAATAACGAAGAATGGGGTCAAGATTCATCAAACAATGCAGAATGGGGTCAAGATTCTTCCCAGATAGGGCTCCCTAAACCTGTTAATGATGAAGCTGAGTGGTCTGATGGCTGGAGAAGTAATTAA 2661 0.4085 MSTAGWSDEERSVIGDTAEIGFLDFEEEKSVCSYFDYEGPVVVSAPFPFVEGKPQSVLMGDTAVDLISIRNTTDEPVDLWSVHIFASNPTDSFTLSLTEPLPENSNAEGEQSCLESFSLEDRVLQPRENLKVWLSCKTKEIGMCSSVIYFDAGDEKIERVVFLLVEDKISKSLASKRPYSRAKKKDKFVVDNYVPGSRPAGKPTRRYINRLPKYHIPRDMRELLENNQIPQVVEQGLTRSTYSSYFKTLIIMEEIQLEEDMRIYDMESISMRKRNNRFLSMEVPGLAERRPSLVHGDYIFVKLAYDNSNRQPYQGFIHRVEADEIYLKFDPEFHFYHKDENTYDVHFTYNRINMRRLYQAAEATQNLGTDILFPSASIKRHIKTTALVPISGTFNEEQICSIKMILGCKGAPPYLIHGPPGTGKTRTIVEVILQLYKYHKNARILVCAPSNSAADYILERLLTQQDIELRENEIFRLNASTRPYEDVKPEIIRFCFFDDMVFKCPPVNALSYYKIIISTYMSASLLYAEDLARGHFSHIFLDEAGQASEPETLIPVSHLCTMKTVVVLAGDQLQLGPVIYSKKADEFGLGVSYMERLSQLPLYASGDTNYVTRLIRNYRCHPAILHLPSKLFYCGELLACRDSTTFLTMGELLPNKEFPILFYGIQGCDEREGNNPSWFNRIEVSKVIELVSRLIAGGNIKEKNIGIITPYRQQVSKIKQTLENLDMPDIKVGSVEQFQGQEMEVIIISTVRSTIKHNEFDRVHCLGFLSNYRRFNVAITRAISLLVIIGNPHIICKDDYWSQMLWYCVDNSSYQGCSLPERVEPYDDEDAEENPYSTEDNAWPSNNEEWGQDSSNNAEWGQDSSQIGLPKPVNDEAEWSDGWRSN 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium612g00002 886 FunFam Probable RNA helicase SDE3 619 817 - -
Vium612g00002 886 CDD DEXXQc_Helz-like 395 619 IPR026122 GO:0003723|GO:0032574
Vium612g00002 886 Gene3D - 619 819 IPR027417 -
Vium612g00002 886 CDD SF1_C_Upf1 620 808 IPR047187 -
Vium612g00002 886 PANTHER CANCER/TESTIS ANTIGEN 55 116 380 - -
Vium612g00002 886 FunFam Probable RNA helicase SDE3 344 488 - -
Vium612g00002 886 MobiDBLite consensus disorder prediction 838 869 - -
Vium612g00002 886 Pfam AAA domain 591 792 IPR041679 -
Vium612g00002 886 Gene3D - 317 603 IPR027417 -
Vium612g00002 886 Pfam AAA domain 394 489 IPR041677 GO:0004386
Vium612g00002 886 Pfam AAA domain 510 582 IPR041677 GO:0004386
Vium612g00002 886 MobiDBLite consensus disorder prediction 827 886 - -
Vium612g00002 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 803 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium612g00002 Vium-Chr612 13949 18783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium612g00002 332 550 Core DNA Replication Machinery Family AT1G08840 26.106 2.65e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium612g00002 K18422 - gmx:100801796 1534.62